Reference manual

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install.packages("covr")

3.6.4 by Jim Hester, 6 months ago


https://covr.r-lib.org, https://github.com/r-lib/covr


Report a bug at https://github.com/r-lib/covr/issues


Browse source code at https://github.com/cran/covr


Authors: Jim Hester [aut, cre] , Willem Ligtenberg [ctb] , Kirill Müller [ctb] , Henrik Bengtsson [ctb] , Steve Peak [ctb] , Kirill Sevastyanenko [ctb] , Jon Clayden [ctb] , Robert Flight [ctb] , Eric Brown [ctb] , Brodie Gaslam [ctb] , Will Beasley [ctb] , Robert Krzyzanowski [ctb] , Markus Wamser [ctb] , Karl Forner [ctb] , Gergely Daróczi [ctb] , Jouni Helske [ctb] , Kun Ren [ctb] , Jeroen Ooms [ctb] , Ken Williams [ctb] , Chris Campbell [ctb] , David Hugh-Jones [ctb] , Qin Wang [ctb] , Doug Kelkhoff [ctb] , Ivan Sagalaev [ctb, cph] (highlight.js library) , Mark Otto [ctb] (Bootstrap library) , Jacob Thornton [ctb] (Bootstrap library) , Bootstrap contributors [ctb] (Bootstrap library) , Twitter , Inc [cph] (Bootstrap library)


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports digest, stats, utils, jsonlite, rex, httr, crayon, withr, yaml

Depends on methods

Suggests R6, curl, knitr, rmarkdown, htmltools, DT, testthat, rlang, rstudioapi, xml2, parallel, memoise, mockery, covr


Imported by SMARTp, nRegression, pkgnet, riskmetric.

Suggested by ABCoptim, ACEP, AICcPermanova, AIPW, APCtools, APackOfTheClones, ARTool, ARUtools, AcademicThemes, AlphaPart, AmesHousing, AnanseSeurat, AnthropMMD, BAS, BTYDplus, BaseSet, BayesMallows, BayesMassBal, BayesPostEst, BayesTools, BayesfMRI, Bchron, BinaryDosage, BioRssay, C50, CDMConnector, CEC, CGGP, CLVTools, COINr, CRE, CVXR, CVrisk, CausalGPS, CausalImpact, CausalQueries, CholWishart, ClustImpute, ClusterR, CodelistGenerator, CohortCharacteristics, ComplexUpset, ConNEcT, ContourFunctions, CoordinateCleaner, CptNonPar, CrossClustering, Cubist, CytOpT, DAISIE, DAISIEprep, DBI, DImodels, DSAIDE, DSAIRM, DTwrappers, DTwrappers2, DataExplorer, DataFakeR, DataPackageR, DataSpaceR, Delaporte, DemoDecomp, DemografixeR, DepthProc, DescrTab2, Distance, DoubleML, DrugUtilisation, Durga, EBASE, ECOSolveR, EGM, EGRET, EGRETci, EML, EcoNetGen, Ecume, EmissV, EnvStats, EpiEstim, EpiNow2, EstimationTools, FACT, FLORAL, FRK, FSA, FSelectorRcpp, FeatureImpCluster, FedData, FlyingR, FunnelPlotR, GDPuc, GGIR, GIFT, GLMMcosinor, GeoMongo, GetDFPData2, GetTDData, GillespieSSA2, GimmeMyPlot, GlmSimulatoR, GxEScanR, HaDeX, HiClimR, HomomorphicEncryption, HotellingEllipse, HuraultMisc, IBCF.MTME, IBRtools, IDEATools, IPDFileCheck, IndexNumR, Inflation, IxPopDyMod, JSmediation, JWileymisc, JointAI, KMunicate, KernelKnn, L0Learn, LRMF3, LRTesteR, LexisNexisTools, LoopRig, MBBEFDLite, MCPModPack, MDBED, MFO, MFPCA, MLVSBM, MODISTools, MSEtool, MTLR, MTSYS, MainExistingDatasets, MassWateR, MetaNLP, MixMatrix, Momocs, MortalityGaps, NACHO, NHSRplotthedots, NMdata, NetLogoR, NetworkExtinction, NetworkRiskMeasures, NicheBarcoding, NlsyLinks, Nmisc, OBIC, OCSdata, ODEsensitivity, OTrecod, OddsPlotty, OpenImageR, OpenLand, OpenMx, OpenRepGrid, OpenRepGrid.ic, OptimalGoldstandardDesigns, PANACEA, PCMBase, PCMBaseCpp, PELVIS, PKNCA, POMADE, PPtreeregViz, PRDA, PROscorer, PROscorerTools, PSAWR, Pade, ParamHelpers, PatientProfiles, PhilipsHue, PlackettLuce, PointedSDMs, PooledCohort, PopED, PostcodesioR, PosteriorBootstrap, PrettyCols, RAQSAPI, RAthena, RCzechia, REDCapR, REDCapTidieR, REPLesentR, REndo, RFishBC, RGF, RInno, RNeXML, RNifti, RNiftyReg, ROpenCVLite, RPostgres, RSA, RSQL, RSSL, RSSthemes, RSauceLabs, RSelenium, RTL, RVerbalExpressions, RWDataPlyr, RWmisc, RcppHNSW, RepoGenerator, Require, Rigma, RoBMA, RoBSA, RoBTT, Rpadrino, Rpolyhedra, Rsagacmd, S7, SAMtool, SCORPIUS, SCpubr, SDMtune, SLEMI, SLOPE, SPEI, SSLR, SWMPr, SciViews, ShrinkCovMat, SimCorMultRes, SimEngine, SimNPH, SimplyAgree, SingleCaseES, SixSigma, SmartEDA, SpaDES, SpaDES.core, SpaDES.tools, SpatMCA, SpatPCA, SticsRFiles, SuperpixelImageSegmentation, Superpower, TDAstats, TUFLOWR, TestFunctions, TextForecast, TrenchR, TwitterAutomatedTrading, UCSCXenaShiny, UCSCXenaTools, VIM, VicmapR, VulnToolkit, W4MRUtils, Wats, WoodburyMatrix, WufooR, ZillowR, academictwitteR, accessibility, accessrmd, ace2fastq, actilifecounts, activAnalyzer, activatr, actogrammr, adaptDiag, adaptr, adbi, adc, additive, adept, adestr, adjustedCurves, admiral.test, admiraldev, admiralonco, admiralophtha, admiralvaccine, admixr, affinity, agcounts, agua, agvgd, aiRly, airnow, aldvmm, alfr, alfred, almanac, alphaci, altdoc, amapGeocode, ambient, amerifluxr, ami, and, angstroms, annotater, anomalize, antaresEditObject, antaresProcessing, antaresRead, antaresViz, anyflights, aopdata, aorsf, apexcharter, aphylo, appeears, appler, applicable, appsheet, apyramid, archeoViz, archeofrag, archetyper, archive, areal, arealDB, arena2r, arenar, arkdb, armspp, artpack, asciiSetupReader, asciicast, askgpt, aspline, assertions, assertr, assertthat, assignR, asymptor, attention, attenuation, auditor, auk, aum, autocogs, autokeras, autothresholdr, available, avotrex, aweek, azlogr, baRcodeR, babelgene, babelwhale, bacondecomp, baggr, baguette, baizer, baker, bamm, bandicoot, bark, basemaps, baskexact, basksim, batata, bayesDP, bayesian, bayesmove, bayesplay, bbw, bcdata, bdDwC, bdc, bdrc, behavr, 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dtrackr, dub, duckduckr, dyn.log, dynConfiR, dynamicSDM, dynamite, dyngen, dynprog, dynutils, dynwrap, eRTG3D, earlyR, earthtide, easyalluvial, eatATA, eatGADS, eatTools, echarts4r, echo, ecmwfr, economiccomplexity, ecostats, ecotox, ecr, edeaR, edgarWebR, edwards97, eia, einsum, eixport, elasdics, elastes, elections.dtree, elisr, ellipsis, elmNNRcpp, eltr, embed, emld, emoji, empichar, envstat, epicontacts, epigraphdb, epikit, epiomics, episensr, epitrix, epocakir, eq5d, equil2, era, erah, erfe, ergm, ergm.count, ergm.ego, ergm.rank, ergmito, err, errorist, errorlocate, escalation, essurvey, estimators, eudract, eulerr, europeanaR, evaluate, exampletestr, excelR, excluder, exifr, experDesign, expowo, expstudy, extendedFamily, extraoperators, extras, exuber, eyelinker, ezcox, ezplot, fHMM, fMRIscrub, fMRItools, fable, fable.prophet, fableCount, fabletools, factory, fairmodels, fakemake, fakir, farver, fastDummies, fastGLCM, fastRG, fastTS, fastText, fastadi, fastpos, fastrep, fastshap, faux, fauxnaif, fca, fcaR, fcci, fdaoutlier, fdapaceShiny, fdasrvf, feasts, felp, ferrn, ffp, ffscrapr, fgdr, fgeo, fgeo.analyze, fgeo.plot, fgeo.tool, fgitR, fiery, fig, filelock, filesstrings, finetune, fipio, fishbc, fisheye, fitzRoy, fixerapi, flashr, fledge, flexlsx, flexpolyline, flexsurv, flexsurvcure, flipr, flobr, flow, flying, fmbasics, fmcmc, fmdates, fmf, fmriqa, fmtr, foghorn, fontawesome, foolbox, footprint, forcats, forecastML, forestecology, forestly, forestploter, forge, formatdown, formattable, formods, formulaic, formulops, foto, fourierin, fpCompare, fpeek, fracture, fredr, frequency, fresh, fritools, fritools2, fs, fscache, fslr, funData, funcharts, functiondepends, fungible, furrr, fuzzyjoin, fuzzywuzzyR, fwildclusterboot, fxl, fy, gMCPLite, galah, galamm, gamma, gargle, gastempt, gbfs, gbifdb, gbm, gcite, geex, gemma2, gender, genderBR, generics, genieBPC, geniusr, geobr, geocmeans, geofacet, geofi, geogrid, geojson, geojsonR, geojsonio, geojsonsf, geometries, geomtextpath, geonode4R, getDTeval, getmstatistic, getspres, gfonts, gganimate, ggblend, ggdag, ggdendro, ggdist, ggeasy, ggedit, ggetho, ggforce, ggformula, ggfx, ggh4x, gghalfnorm, gghdx, gghilbertstrings, ggimg, ggmatplot, ggmice, ggmix, ggmulti, ggnewscale, ggokabeito, ggpackets, ggpage, ggpath, ggperiodic, ggplate, ggplot2, ggpointless, ggprism, ggragged, ggraph, ggridges, ggrounded, ggseg, ggseg3d, ggseqplot, ggsolvencyii, ggspatial, ggstance, ggsurvfit, ggthemes, ggtrace, ggtricks, ggwordcloud, gh, gibble, gifti, gitcreds, gitear, gitignore, gitlink, glassdoor, glmpca, glmtree, glossary, glossr, gluedown, gmapsdistance, gofcat, goldfish, golem, googleAnalyticsR, googleAuthR, googleCloudVisionR, googleComputeEngineR, googlePolylines, googlePublicData, googleTagManageR, grainscape, graphframes, graticule, grattan, gravitas, greta, greta.dynamics, greta.gp, gridtext, groupdata2, groupr, gsDesign, gsDesign2, gsignal, gsisdecoder, gt, gtExtras, gtable, gtfstools, gto, gtreg, gtsummary, guardianapi, gwasrapidd, h3jsr, hackeRnews, hacksig, haldensify, halfmoon, handyFunctions, hansard, happign, hardhat, haven, hdme, heatmaply, heatwaveR, heddlr, helixvis, helsinki, here, hereR, hesim, hetu, highcharter, highfrequency, hilbert, hillR, himach, hlidacr, hmer, hmstimer, holodeck, hpiR, hts, httpgd, httr, httr2, hutilscpp, huxtable, hwep, hwsdr, i2extras, iBreakDown, iNZightMR, iNZightPlots, iNZightRegression, iNZightTS, iNZightTools, iai, ibawds, ibb, ibmsunburst, ical, iccbeta, idopNetwork, igcop, igrf, iheatmapr, ihpdr, ijtiff, imbibe, iml, imola, impactr, imprecise101, imputeMulti, imputeTS, inbreedR, infer, inferr, infix, ingredients, injurytools, inlabru, inlcolor, inldata, inlpubs, innsight, inplace, insane, insee, inspector, intRinsic, intensegRid, interleave, invertiforms, iotables, ipa, ipfr, ipmr, ipumsr, irace, isoWater, isoband, isogeochem, isotracer, itscalledsoccer, ivgets, ivs, ivx, izmir, jSDM, jlmerclusterperm, joineR, josaplay, journalabbr, joyn, jsTree, jsonify, jstor, justifier, k5, kcmeans, kdensity, kendallRandomWalks, kernelboot, keyholder, keypress, keyring, kfino, kgrams, kidsides, kitagawa, klexdatr, knitrProgressBar, konfound, kssa, labNorm, labelled, labelmachine, lactater, lamW, landscapemetrics, landscapetools, languagelayeR, languageserver, lans2r, latentcor, latentnet, latexdiffr, latrend, lavaanExtra, lay, lazyeval, lazytrade, lcc, ldaPrototype, ldsep, leafdown, leaflegend, leaflet.extras2, leaflet.minicharts, leanpubr, legocolors, leiden, leontief, leprechaun, lexRankr, lgpr, lgr, lgrExtra, libr, librarysnapshot, lifecycle, lifx, likelihoodExplore, lime, liminal, linemap, lingtypology, linne, lisa, listWithDefaults, liteq, live, lmeInfo, lmls, lmtp, lobstr, localICE, localModel, locateip, loder, log, logger, logr, logrx, lolR, loon, loon.ggplot, loon.shiny, loon.tourr, lorentz, lpcde, lubridate, lutz, luz, lvmisc, lwgeom, madrat, magclass, magi, magrittr, mailmerge, makepipe, makeunique, manhattanly, manipulateWidget, manymodelr, maotai, mapdeck, mapfit, mapiso, maplegend, mapsf, maptiles, mapview, marginaleffects, mark, markmyassignment, markovmix, matchmaker, mathpix, matlabr, matricks, matsbyname, matsindf, maxnodf, maybe, mazing, mcboost, mclm, mcmcderive, mcmcr, mcparallelDo, mcreplicate, mctq, mcvis, mediacloudr, meditations, melt, meltr, memofunc, memoise, messaging, messydates, metR, metaboData, metaconfoundr, metacore, metaforest, metagam, metalite, metalite.ae, metamer, metanetwork, metatools, metawho, methcon5, metro, mfGARCH, mgsub, microCRAN, micronutr, midrangeMCP, mifa, migraph, mildsvm, miniCRAN, miniPCH, minimaxApprox, missSBM, mixAR, mixchar, mixpoissonreg, mize, mizer, mkin, mlearning, mlfit, mlflow, mlrMBO, mmand, mmapcharr, mmb, mnis, mobilityIndexR, mockr, mod, modeldata, modeldatatoo, modeldb, modelenv, modelr, modelsummary, modeltests, modeltime, modeltime.resample, moderndive, modifiedmk, monashtipr, monitOS, monoClust, mosaic, motif, motifcluster, mpmsim, mpoly, mpspline2, mrds, mrf2d, mscstts, msgr, mshap, msm, mtdesign, mtscr, multidplyr, multifear, multilevelTools, multilevelmod, multinomineq, multivarious, multiverse, mutationtypes, mverse, mxnorm, n1qn1, naijR, nakagami, namer, nandb, naniar, nanostringr, naptime, nat.templatebrains, nat.utils, natmanager, natstrat, navigatr, nc, ncdump, ncmeta, ndjson, neonstore, neotoma2, nestedmodels, netUtils, netdiffuseR, netrankr, nettskjemar, network, neuralGAM, neurobase, neurohcp, nevada, nflplotR, nflreadr, nhdR, nieve, nipnTK, nlist, nlmixr2lib, nloptr, nlrx, nmrrr, nmslibR, noaaoceans, noah, noctua, nomnoml, nonprobsvy, normalr, nosoi, npi, nseval, nvctr, oai, occCite, octopusR, od, odbc, ohoegdm, olsrr, omopgenerics, ompr, omsvg, ondisc, onetime, onion, onpoint, oolong, oottest, openVA, openai, openaistream, openalexR, openbankeR, opendatatoronto, opentripplanner, optim.functions, optrefine, ore, oro.nifti, orsifronts, osfr, oshka, oskeyring, osmextract, osrm, otp, otpr, outbreaks, 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shinyChatR, shinyFiles, shinyML, shinyMatrix, shinyRatings, shinyShortcut, shinyWidgets, shinyauthr, shinybusy, shinylogs, shinymodels, shinyobjects, shinyvalidate, shoredate, showimage, sicegar, siconvr, sigminer, sigmoid, signnet, signs, silicate, simDAG, simPH, simPop, simcdm, simglm, simhelpers, simitation, simmr, simplecolors, simplextree, simrel, sims, simstandard, simstudy, simtrial, singR, singleRcapture, sits, skeletor, sketch, skimr, skylight, skynet, slackr, sleeperapi, sleepr, slickR, slider, sloop, slurmR, smartmap, smdocker, smidm, smoof, smoothr, snakecase, snotelr, socialranking, soma, sonicscrewdriver, sortable, sotkanet, sovereign, spMaps, spNetwork, spacejamr, spaero, sparseLRMatrix, sparseR, sparsediscrim, sparseinv, spatialising, spatialsample, spatialwarnings, spatialwidget, spbabel, spduration, spectralR, spectre, spex, spiderbar, spinBayes, spind, spinifex, spiritR, splitstackshape, spotoroo, spray, sqlscore, squat, srlTS, srt, srvyr, ssddata, ssdtools, sss, stRoke, stacks, stagedtrees, standardlastprofile, standby, stapler, stars, starter, statebins, states, statgenQTLxT, stationaRy, statnet.common, stats19, stelfi, stemmatology, stenR, stencilaschema, stickyr, stoRy, stochLAB, stopwords, strex, strider, stringr, subformula, suggests, sugrrants, summariser, summclust, supercells, supernova, suppdata, survex, surveydata, surveygraph, survout, svDialogs, svDialogstcltk, svGUI, svHttp, svKomodo, svMisc, svSocket, svSweave, svUnit, svglite, svines, svrep, swaRm, swaRmverse, swatches, sweater, syn, syntaxr, systemfonts, table.glue, tableschema.r, tabshiftr, tabulapdf, tabularaster, tacmagic, tactile, tanaka, tardis, tauturri, taxadb, taxalight, tbrf, tcgaViz, tdigest, tdsc, tealeaves, telegram.bot, tempdisagg, templateICAr, templates, tenispolaR, tensr, tergm, term, terrainr, testdat, testit, testthat, testthis, texPreview, text, text2speech, text2vec, textTinyR, textdata, textrecipes, textreuse, textshaping, tf, tfrmt, tglkmeans, tgver, thaipdf, thankr, themis, threesixtygiving, tibble, tibbletime, tibblify, tidyHeatmap, tidyRSS, tidySEM, tidyUSDA, tidybayes, tidycharts, tidyclust, tidycmprsk, tidycode, tidycomm, tidyfast, tidygapminder, tidygraph, tidyhte, tidyhydat, tidyindex, tidyjson, tidylda, tidylo, tidylog, tidymodels, tidync, tidyplus, tidypmc, tidyposterior, tidypredict, tidyquant, tidyquery, tidyr, tidyselect, tidysmd, tidysq, tidytext, tidytuesdayR, tidyverse, tikzDevice, timbr, tinkr, tinter, tinyProject, tmap, tnl.Test, tokenizers, toolStability, tor, torch, tourr, toxEval, toxpiR, tracer, trackdf, trackdown, trackeR, tradepolicy, tradestatistics, traipse, trajr, transformer, transformr, translated, transx, tree.interpreter, treestartr, trekcolors, trekfont, trelliscopejs, trendchange, trending, trip, triplot, tryCatchLog, tsbox, tsibble, tsmp, tufte, tune, tweenr, twn, txshift, typed, tzdb, ubms, uci, uklr, ukpolice, uncmbb, uncorbets, unglue, unheadr, unifir, unigd, unine, uniset, unitquantreg, univariateML, universals, unjoin, unpivotr, unusualprofile, updater, updog, urlchecker, urlshorteneR, usa, usedthese, useful, usefun, usemodels, usethis, usmap, usmapdata, utf8, utilsIPEA, uwot, validatetools, valr, valueEQ5D, vctrs, vdiffr, vembedr, versionsort, vetiver, villager, vimp, vinereg, vip, viridis, viridisLite, virtuoso, visOmopResults, visTree, viscomp, viscomplexr, visdat, vistime, vistributions, vitae, vivid, voluModel, voteogram, votesmart, vov, vroom, vsp, wactor, waldo, wand, warbleR, warp, washi, waterquality, wav, wavemulcor, waveslim, waywiser, wdm, wdman, webchem, webdriver, webfakes, webmap, whereami, whereport, whitechapelR, whitestrap, whitewater, whoami, whomds, widyr, wikifacts, wikkitidy, wildmeta, wildrwolf, wingen, withr, wordpiece, wordpredictor, workflows, workflowsets, wqtrends, wru, x12, x3ptools, xlsx, xml2, xmlparsedata, xnet, xrf, xtune, yahoofinancer, yardstick, yesno, yfR, ymlthis, ypr, yum, zeitgebr, zip, zipangu, zipcodeR, zonebuilder, zoomerjoin, zscorer.

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See at CRAN