Population (and Individual) Optimal Experimental Design

Optimal experimental designs for both population and individual studies based on nonlinear mixed-effect models. Often this is based on a computation of the Fisher Information Matrix. This package was developed for pharmacometric problems, and examples and predefined models are available for these types of systems. The methods are described in Nyberg et al. (2012) , and Foracchia et al. (2004) .


PopED

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PopED computes optimal experimental designs for both population and individual studies based on nonlinear mixed-effect models. Often this is based on a computation of the Fisher Information Matrix (FIM).

Installation

You need to have R installed. Download the latest version of R from www.r-project.org. You can install the released version of PopED from CRAN with:

install.packages("PopED")

And the development version from GitHub with:

# install.packages("devtools")
devtools::install_github("andrewhooker/PopED")

Getting started

To get started you need to define

  1. A model.
  2. An initial design (and design space if you want to optimize).
  3. The tasks to perform.

Learn more in this introduction to PopED

Contact

You are welcome to:

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("PopED")

0.7.0 by Andrew C. Hooker, 2 years ago


https://andrewhooker.github.io/PopED/, https://github.com/andrewhooker/PopED


Report a bug at https://github.com/andrewhooker/PopED/issues


Browse source code at https://github.com/cran/PopED


Authors: Andrew C. Hooker [aut, cre, trl, cph] , Marco Foracchia [aut] (O-Matrix version) , Eric Stroemberg [ctb] (MATLAB version) , Martin Fink [ctb] (Streamlining code , added functionality , vignettes) , Giulia Lestini [ctb] (Streamlining code , added functionality , vignettes) , Sebastian Ueckert [aut] (MATLAB version , , Joakim Nyberg [aut] (MATLAB version)


Documentation:   PDF Manual  


LGPL (>= 3) license


Imports ggplot2, MASS, mvtnorm, dplyr, codetools, stats, utils, magrittr, boot, purrr, stringr, tibble, gtools

Suggests testthat, Hmisc, nlme, GA, deSolve, Rcpp, shiny, rhandsontable, knitr, rmarkdown, gridExtra, covr, devtools, mrgsolve


Imported by ncappc.

Suggested by babelmixr2, nlmixr2save.


See at CRAN