Analysis of Massive SNP Arrays

Easy-to-use, efficient, flexible and scalable tools for analyzing massive SNP arrays. Privé et al. (2018) .


Reference manual

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1.8.1 by Florian Privé, 4 months ago

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Authors: Florian Privé [aut, cre] , Michael Blum [ths] , Hugues Aschard [ths]

Documentation:   PDF Manual  

GPL-3 license

Imports bigassertr, bigparallelr, bigsparser, bigreadr, bigutilsr, data.table, foreach, ggplot2, magrittr, Matrix, methods, Rcpp, stats, vctrs

Depends on bigstatsr

Suggests bindata, covr, dbplyr, dplyr, gaston, glue, Hmisc, pcadapt, rmutil, RSpectra, RSQLite, R.utils, spelling, testthat, tibble, xgboost

Linking to bigsparser, bigstatsr, Rcpp, RcppArmadillo, rmio

System requirements: Package 'bigsnpr' includes a few functions that wrap existing software such as 'PLINK' <>. Functions are provided to download these software. Note that these external software might not work for some operating systems (e.g. 'PLINK' might not work on Solaris).

Imported by RapidoPGS.

See at CRAN