Analysis of Massive SNP Arrays

Easy-to-use, efficient, flexible and scalable tools for analyzing massive SNP arrays .


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Reference manual

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install.packages("bigsnpr")

1.4.4 by Florian Privé, 4 days ago


https://privefl.github.io/bigsnpr


Report a bug at https://github.com/privefl/bigsnpr/issues


Browse source code at https://github.com/cran/bigsnpr


Authors: Florian Privé [aut, cre] , Michael Blum [ths] , Hugues Aschard [ths]


Documentation:   PDF Manual  


GPL-3 license


Imports bigassertr, bigparallelr, bigsparser, bigreadr, bigutilsr, data.table, foreach, ggplot2, magrittr, Matrix, methods, Rcpp, stats

Depends on bigstatsr

Suggests bindata, covr, dbplyr, dplyr, gaston, glue, Hmisc, pcadapt, rmutil, RSpectra, RSQLite, R.utils, spelling, testthat, xgboost

Linking to bigsparser, bigstatsr, Rcpp, RcppArmadillo, rmio

System requirements: Package 'bigsnpr' includes a few functions that wrap existing software such as 'PLINK' <www.cog-genomics.org/plink2>. Functions are provided to download these software. Note that these external software might not work for some operating systems (e.g. 'PLINK' might not work on Solaris).


See at CRAN