Reference manual

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install.packages("bigsnpr")

1.11.6 by Florian Privé, 19 days ago


https://privefl.github.io/bigsnpr/


Report a bug at https://github.com/privefl/bigsnpr/issues


Browse source code at https://github.com/cran/bigsnpr


Authors: Florian Privé [aut, cre] , Michael Blum [ths] , Hugues Aschard [ths] , Bjarni Jóhann Vilhjálmsson [ths]


Documentation:   PDF Manual  


GPL-3 license


Imports bigassertr, bigparallelr, bigsparser, bigreadr, bigutilsr, data.table, doRNG, foreach, ggplot2, magrittr, Matrix, methods, Rcpp, runonce, stats, vctrs

Depends on bigstatsr

Suggests bindata, covr, dbplyr, dplyr, gaston, glue, Hmisc, microbenchmark, pcadapt, quadprog, RhpcBLASctl, rmutil, RSpectra, RSQLite, R.utils, spelling, testthat, tibble, xgboost

Linking to bigsparser, bigstatsr, Rcpp, RcppArmadillo, rmio, roptim

System requirements: A few functions from package 'bigsnpr' wrap existing software such as 'PLINK' <www.cog-genomics.org/plink2>. Functions are provided to download these software. Note that these external software might not work for some operating systems (e.g. 'PLINK' might not work on Solaris).


Imported by PRSPGx, RapidoPGS, locStra.


See at CRAN