2

protti

Bottom-Up Proteomics and LiP-MS Quality Control and Data Analysis Tools

Useful functions and workflows for proteomics quality control and data analysis of both limited proteolysis-coupled mass spectrometry (LiP-MS) (Feng et. al. (2014) ) and regular bottom-up proteomics experiments. Data generated with search tools such as 'Spectronaut', 'MaxQuant' and 'Proteome Discover' can be easily used due to flexibility of functions.

News

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.
install.packages("protti")

0.1.1 by Jan-Philipp Quast, 3 months ago

https://github.com/jpquast/protti, https://jpquast.github.io/protti/

Report a bug at https://github.com/jpquast/protti/issues

Browse source code at https://github.com/cran/protti

Authors: Jan-Philipp Quast [aut, cre] , Dina Schuster [aut] , ETH Zurich [cph, fnd]

Documentation:   PDF Manual  

MIT + file LICENSE license

Imports rlang, dplyr, stringr, magrittr, data.table, janitor, progress, purrr, tidyr, ggplot2, forcats, tibble, plotly, ggrepel, utils, grDevices, curl

Suggests testthat, covr, knitr, rmarkdown, proDA, limma, dendextend, pheatmap, heatmaply, viridis, iq, furrr, future, parallel, seriation, drc, naniar, httr, igraph, stringi, STRINGdb

See at CRAN

R links

R homepage

Download R

Mailing lists

R documentation

R manuals

R FAQs

The R Journal

CRAN links

CRAN homepage

CRAN repository policy

Submit a package

METACRAN stuff

About METACRAN

At github

Report a bug