Dynamical Systems Approach to Immune Response Modeling

A collection of 'shiny' apps that allow for the simulation and exploration of various within-host immune response scenarios. The purpose of the package is to help individuals learn about within-host infection and immune response modeling from a dynamical systems perspective. All apps include explanations of the underlying models and instructions on what to do with the models. The development of this package was partially supported by NIH grant U19AI117891.


News

DSAIRM 0.5.5

  • Improved way to download simulator functions
  • Fixed typos and other minor mistakes in app documentations.
  • Included functionality that allows shinyappsio deployment

DSAIRM 0.5.0

  • Complete rebuild of back-end and structure, changing from multiple independent shiny apps to a single one.
  • Some user-facing updates and enhancements.
  • Fixed typos and other minor mistakes in app documentations.

DSAIRM 0.4.0

  • Fully functional first release to CRAN.

DSAIRM 0.3.0

  • All apps done, some documentation not finished

DSAIRM 0.2.0

  • Most apps done

DSAIRM 0.1.0

  • This is the first draft of the package

Reference manual

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install.packages("DSAIRM")

0.8.2 by Andreas Handel, 2 months ago


https://ahgroup.github.io/DSAIRM, https://github.com/ahgroup/DSAIRM/


Report a bug at https://github.com/ahgroup/DSAIRM/issues


Browse source code at https://github.com/cran/DSAIRM


Authors: Andreas Handel [aut, cre] , Yang Ge [ctb] , Spencer Hall [ctb] , Sina Solaimanpour [ctb] , Henok Woldu [ctb]


Documentation:   PDF Manual  


GPL-3 license


Imports adaptivetau, boot, deSolve, dplyr, ggplot2, gridExtra, lhs, nloptr, plotly, stats, utils, XML

Depends on shiny

Suggests covr, knitr, pkgdown, rmarkdown, testthat


See at CRAN