Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data

An accurate and easy tool for performing trajectory inference on single cells using single-cell RNA sequencing data. In addition, SCORPIUS provides functions for discovering the most important genes with respect to the reconstructed trajectory, as well as nice visualisation tools. Cannoodt et al. (2016) .


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Reference manual

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install.packages("SCORPIUS")

1.0.2 by Robrecht Cannoodt, a year ago


http://github.com/rcannood/SCORPIUS


Report a bug at https://github.com/rcannood/SCORPIUS/issues


Browse source code at https://github.com/cran/SCORPIUS


Authors: Robrecht Cannoodt [aut, cre] , rcannood) , Wouter Saelens [aut] , zouter)


Documentation:   PDF Manual  


GPL-3 license


Imports dplyr, dynutils, grDevices, ggplot2, magrittr, MASS, mclust, pbapply, pheatmap, princurve, purrr, ranger, RColorBrewer, reshape2, splines, stats, tidyr, TSP, utils

Suggests knitr, rmarkdown, testthat


See at CRAN