Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data

An accurate and easy tool for performing linear trajectory inference on single cells using single-cell RNA sequencing data. In addition, SCORPIUS provides functions for discovering the most important genes with respect to the reconstructed trajectory, as well as nice visualisation tools. Cannoodt et al. (2016) .


Reference manual

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1.0.8 by Robrecht Cannoodt, 7 months ago

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Authors: Robrecht Cannoodt [aut, cre] , rcannood) , Wouter Saelens [ctb] , zouter)

Documentation:   PDF Manual  

GPL-3 license

Imports dplyr, dynutils, dynwrap, grDevices, ggplot2, lmds, MASS, Matrix, mclust, methods, pbapply, pheatmap, princurve, purrr, ranger, RANN, RColorBrewer, reshape2, stats, tidyr, TSP

Suggests covr, knitr, rmarkdown, R.rsp, testthat

See at CRAN