Joint Species Distribution Models

Fits joint species distribution models ('jSDM') in a hierarchical Bayesian framework (Warton et al. 2015 ). The Gibbs sampler is written in C++. It uses 'Rcpp', 'Armadillo' and 'GSL' to maximize computation efficiency.


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Reference manual

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install.packages("jSDM")

0.1.0 by Ghislain Vieilledent, 16 days ago


https://ecology.ghislainv.fr/jSDM, https://github.com/ghislainv/jSDM


Report a bug at https://github.com/ghislainv/jSDM/issues


Browse source code at https://github.com/cran/jSDM


Authors: Ghislain Vieilledent [aut, cre] , Jeanne Clément [aut] , CIRAD [cph, fnd]


Documentation:   PDF Manual  


GPL-3 | file LICENSE license


Imports Rcpp, graphics, stats, coda, corrplot

Suggests knitr, raster, sp, rmarkdown, bookdown, testthat, boral

Linking to Rcpp, RcppArmadillo, RcppGSL

System requirements: GNU GSL


See at CRAN