Gillespie's Stochastic Simulation Algorithm for Impatient People

A fast, scalable, and versatile framework for simulating large systems with Gillespie's Stochastic Simulation Algorithm ('SSA'). This package is the spiritual successor to the 'GillespieSSA' package originally written by Mario Pineda-Krch. Benefits of this package include major speed improvements (>100x), easier to understand documentation, and many unit tests that try to ensure the package works as intended.


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Reference manual

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install.packages("GillespieSSA2")

0.2.5 by Robrecht Cannoodt, 2 months ago


http://github.com/rcannood/GillespieSSA2


Report a bug at https://github.com/rcannood/GillespieSSA2/issues


Browse source code at https://github.com/cran/GillespieSSA2


Authors: Robrecht Cannoodt [aut, cre] , Wouter Saelens [aut]


Documentation:   PDF Manual  


GPL (>= 3) license


Imports assertthat, dplyr, dynutils, Matrix, methods, purrr, Rcpp, RcppXPtrUtils, readr, rlang, stringr, tidyr

Suggests ggplot2, GillespieSSA, knitr, rmarkdown, testthat

Linking to Rcpp


See at CRAN