Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')

Wrapper functions that interface with 'FSL' < http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/>, a powerful and commonly-used 'neuroimaging' software, using system commands. The goal is to be able to interface with 'FSL' completely in R, where you pass R objects of class 'nifti', implemented by package 'oro.nifti', and the function executes an 'FSL' command and returns an R object of class 'nifti' if desired.


Reference manual

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install.packages("fslr")

2.27.0 by John Muschelli, a year ago


Report a bug at https://github.com/muschellij2/fslr/issues


Browse source code at https://github.com/cran/fslr


Authors: John Muschelli [aut, cre] (ORCID:


Documentation:   PDF Manual  


GPL-3 license


Imports methods, R.utils, graphics, grDevices, stats, utils

Depends on oro.nifti, neurobase

Suggests knitr, rmarkdown, covr

System requirements: FSL


Imported by MRIreduce.

Suggested by spant.


See at CRAN