Wrapper functions that interface with 'FSL' < http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/>, a powerful and commonly-used 'neuroimaging' software, using system commands. The goal is to be able to interface with 'FSL' completely in R, where you pass R objects of class 'nifti', implemented by package 'oro.nifti', and the function executes an 'FSL' command and returns an R object of class 'nifti' if desired.
reverse_rpi_orient_filethat was causing
ERROR: Could not open file /usr/local/fsl/bin/fslswapdim: 107: [: =: unexpected operatorerror.
topupto the exports.
clusterfrom exports due to conflicts.
read_xfmfor reading transformations.
matrixStatsas unnecessary dependency.
topupand other DTI-based tools.
susanto work properly.
fsleyesin the future release.
Moved functions such as cal_img to oro.nifti package. They are all legacies, such as cal_img still works, but calibrateImage and other camelCase functions have been made default.