Wrapper Functions for FSL ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')

Wrapper functions that interface with 'FSL' < http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/>, a powerful and commonly-used 'neuroimaging' software, using system commands. The goal is to be able to interface with 'FSL' completely in R, where you pass R objects of class 'nifti', implemented by package 'oro.nifti', and the function executes an 'FSL' command and returns an R object of class 'nifti' if desired.


Travis-CI build status:

fslr is a port/wrapper of FSL to R.

News

fslr v1.4-4 (Release date: 2015-05-20)

Changes:

  • Moved functions such as cal_img to oro.nifti package. They are all legacies, such as cal_img still works, but calibrateImage and other camelCase functions have been made default.
  • Fixed fsl_biascorrect.

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("fslr")

2.12 by John Muschelli, 7 months ago


Report a bug at https://github.com/muschellij2/fslr/issues


Browse source code at https://github.com/cran/fslr


Authors: John Muschelli <muschellij2@gmail.com>


Documentation:   PDF Manual  


Task views: Medical Image Analysis


GPL-3 license


Imports methods, matrixStats, R.utils, graphics, grDevices, stats, utils

Depends on oro.nifti, neurobase

Suggests knitr, rmarkdown

System requirements: FSL <http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/>


Imported by oasis.


See at CRAN