Gene Orthologs for Model Organisms in a Tidy Data Format

Genomic analysis of model organisms often requires the use of databases based on human data or making comparisons to patient-derived resources. This requires converting genes between human and non-human analogues. The babelgene R package provides predicted gene orthologs/homologs for frequently studied model organisms in an R-friendly tidy/long format. The package integrates orthology assertion predictions sourced from multiple databases as compiled by the HGNC Comparison of Orthology Predictions (HCOP) (Wright et al. 2005 , Eyre et al. 2007 , Seal et al. 2011 ).


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install.packages("babelgene")

21.4 by Igor Dolgalev, 22 days ago


https://igordot.github.io/babelgene/


Report a bug at https://github.com/igordot/babelgene/issues


Browse source code at https://github.com/cran/babelgene


Authors: Igor Dolgalev [aut, cre]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports dplyr, methods, rlang

Suggests covr, knitr, rmarkdown, testthat


Imported by msigdbr.


See at CRAN