An Interface for Running 'ADMIXTOOLS' Analyses

An interface for performing all stages of 'ADMIXTOOLS' analyses (< https://reich.hms.harvard.edu/software>) entirely from R. Wrapper functions (D, f4, f3, etc.) completely automate the generation of intermediate configuration files, run 'ADMIXTOOLS' programs on the command-line, and parse output files to extract values of interest. This allows users to focus on the analysis itself instead of worrying about low-level technical details. A set of complementary functions for processing and filtering of data in the 'EIGENSTRAT' format is also provided.


News

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("admixr")

0.9.1 by Martin Petr, 4 months ago


https://github.com/bodkan/admixr


Report a bug at https://github.com/bodkan/admixr/issues


Browse source code at https://github.com/cran/admixr


Authors: Martin Petr [aut, cre]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports dplyr, magrittr, readr, stringr, tibble, stats, rlang, utils

Suggests covr, glue, testthat, tidyr, knitr, rmarkdown, tidyverse

System requirements: ADMIXTOOLS suite of command-line utilities for population genetics. See <https://reich.hms.harvard.edu/software> for the most recent installation instructions and further information.


See at CRAN