Dynamical Systems Approach to Infectious Disease Epidemiology (Ecology/Evolution)

Exploration of simulation models (apps) of various infectious disease transmission dynamics scenarios. The purpose of the package is to help individuals learn about infectious disease epidemiology (ecology/evolution) from a dynamical systems perspective. All apps include explanations of the underlying models and instructions on what to do with the models.


DSAIDE 0.7.0

User facing changes

  • Major changes to underlying plotting and text generating approaches, now uses ggplot, shows better plots and more informative text.

  • Added a function that lets one call apps without going through the main menu.

  • Added new apps.

  • Updated a lot of the instructions and documentation.

  • Fixed bug that prevented opening of apps from the main menu for some versions of shiny.

Other changes

  • Standardized all simulator functions to return lists.

  • Simplified underlying code and documentation structure of shiny apps.

  • Added some unit tests.

  • Lots of other code cleanup to make things more robust and streamlined

DSAIDE 0.6.0

  • Various bug fixes in the apps and documentation.

  • Updated "what to do" instructions for multiple apps.

DSAIDE 0.5.0

  • Added one new app.

  • Various bug fixes in the apps and documentation.

DSAIDE 0.4.0

  • This is the first release to CRAN.

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.


0.9.3 by Andreas Handel, 6 months ago

https://ahgroup.github.io/DSAIDE/, https://github.com/ahgroup/DSAIDE/

Report a bug at https://github.com/ahgroup/DSAIDE/issues

Browse source code at https://github.com/cran/DSAIDE

Authors: Andreas Handel [aut, cre] , Cody Dailey [ctb] , Isaac Chun-Hai Fung [ctb] , Spencer Hall [ctb] , Ben Listyg [ctb] , Brian McKay [ctb] , John Rossow [ctb] , Sina Solaimanpour [ctb] , Alexis Vittengl [ctb] , Henok Woldu [ctb]

Documentation:   PDF Manual  

GPL-3 license

Imports adaptivetau, deSolve, dplyr, ggplot2, gridExtra, lhs, nloptr, plotly, rlang, stats, utils, XML

Depends on shiny

Suggests covr, devtools, knitr, pkgdown, rmarkdown, roxygen2, testthat

See at CRAN