Dynamical Systems Approach to Infectious Disease Epidemiology (Ecology/Evolution)

Exploration of simulation models (apps) of various infectious disease transmission dynamics scenarios. The purpose of the package is to help individuals learn about infectious disease epidemiology (ecology/evolution) from a dynamical systems perspective. All apps include explanations of the underlying models and instructions on what to do with the models.


News

DSAIDE 0.7.0

User facing changes

  • Major changes to underlying plotting and text generating approaches, now uses ggplot, shows better plots and more informative text.

  • Added a function that lets one call apps without going through the main menu.

  • Added new apps.

  • Updated a lot of the instructions and documentation.

  • Fixed bug that prevented opening of apps from the main menu for some versions of shiny.

Other changes

  • Standardized all simulator functions to return lists.

  • Simplified underlying code and documentation structure of shiny apps.

  • Added some unit tests.

  • Lots of other code cleanup to make things more robust and streamlined

DSAIDE 0.6.0

  • Various bug fixes in the apps and documentation.

  • Updated "what to do" instructions for multiple apps.

DSAIDE 0.5.0

  • Added one new app.

  • Various bug fixes in the apps and documentation.

DSAIDE 0.4.0

  • This is the first release to CRAN.

Reference manual

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install.packages("DSAIDE")

0.8.3 by Andreas Handel, 3 months ago


https://ahgroup.github.io/DSAIDE, https://github.com/ahgroup/DSAIDE


Report a bug at https://github.com/ahgroup/DSAIDE/issues


Browse source code at https://github.com/cran/DSAIDE


Authors: Andreas Handel [aut, cre] , Christine Casey [ctb] (Parasite model app) , Isaac Chun-Hai Fung [ctb] , Ronald Galiwango [ctb] (ID surveillance app) , Chase Golden [ctb] (Maternal Immunity app) , Spencer Hall [ctb] , Ben Listyg [ctb] , Brian McKay [ctb] , John Rossow [ctb] , Sina Solaimanpour [ctb] , Kevin Spiegel [ctb] (Global warming app) , Henok Woldu [ctb]


Documentation:   PDF Manual  


GPL-3 license


Imports adaptivetau, deSolve, dplyr, ggplot2, gridExtra, lhs, nloptr, plotly, stats, utils, XML

Depends on shiny

Suggests covr, devtools, knitr, pkgdown, rmarkdown, roxygen2, testthat


See at CRAN