Dynamical Systems Approach to Infectious Disease Epidemiology

A collection of 'shiny' apps that allow for the simulation and exploration of various infectious disease transmission dynamics scenarios. The purpose of the package is to help individuals learn about infectious disease epidemiology from a dynamical systems perspective. All apps include explanations of the underlying models and instructions on what to do with the models.


DSAIDE 0.7.0

User facing changes

  • Major changes to underlying plotting and text generating approaches, now uses ggplot, shows better plots and more informative text.

  • Added a function that lets one call apps without going through the main menu.

  • Added new apps.

  • Updated a lot of the instructions and documentation.

  • Fixed bug that prevented opening of apps from the main menu for some versions of shiny.

Other changes

  • Standardized all simulator functions to return lists.

  • Simplified underlying code and documentation structure of shiny apps.

  • Added some unit tests.

  • Lots of other code cleanup to make things more robust and streamlined

DSAIDE 0.6.0

  • Various bug fixes in the apps and documentation.

  • Updated "what to do" instructions for multiple apps.

DSAIDE 0.5.0

  • Added one new app.

  • Various bug fixes in the apps and documentation.

DSAIDE 0.4.0

  • This is the first release to CRAN.

Reference manual

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0.8.2 by Andreas Handel, 3 months ago

https://ahgroup.github.io/DSAIDE, https://github.com/ahgroup/DSAIDE

Report a bug at https://github.com/ahgroup/DSAIDE/issues

Browse source code at https://github.com/cran/DSAIDE

Authors: Andreas Handel [aut, cre] , Christine Casey [ctb] (Parasite Model App) , Isaac Chun-Hai Fung [ctb] , Ronald Galiwango [ctb] (Surveillance App) , Chase Golden [ctb] (Maternal Immunity App) , Spencer Hall [ctb] , Ben Listyg [ctb] , Brian McKay [ctb] , John Rossow [ctb] , Sina Solaimanpour [ctb] , Kevin Spiegel [ctb] (Global Warming App) , Henok Woldu [ctb]

Documentation:   PDF Manual  

GPL-3 license

Imports adaptivetau, deSolve, dplyr, ggplot2, gridExtra, lhs, nloptr, plotly, stats, utils, XML

Depends on shiny

Suggests covr, devtools, knitr, pkgdown, rmarkdown, roxygen2, testthat

See at CRAN