Produce Standard/Formalized Demographics Tables

Augment clinical data with metadata to create output used in conventional publications and reports.


codified

Produce standard/formalized demographics tables

Clinical researchers often need to document and report the demographics of all consented subjects. A common use case is for reporting to funding agencies, including the National Institutes of Health (NIH). The NIH requires a particular format for the PHS Inclusion Enrollment Report in each annual Research Performance Progress Report (RPPR).

The codified package, in combination with the REDCapR package, provides a pipeline to directly extract the demographics of consented subjects from a REDCap database, and to rapidly and reproducibly produce standard demographics tables. This pipeline is demonstrated in the vignette, NIH Enrollment Tables in HTML.

Installation and Documentation

The development version can be installed from GitHub after installing the remotes package.

install.packages("remotes") # Run this line if the 'remotes' package isn't installed already.
remotes::install_github(repo = "OuhscBbmc/codified")

The release version can be installed from CRAN.

install.packages("codified")

The package can be uninstalled from your local machine with remove.packages("codified").

Build Status and Package Characteristics

GitHub GitHub Actions Coveralls
Main R-CMD-check Coverage Status
Dev R-CMD-check Coverage Status
Ubuntu LTS Windows Server
Key Value
License License: MIT
Development Doc Rdoc
Zenodo Archive DOI
CRAN Version CRAN_Status_Badge
CRAN Rate CRANPace
Production Doc Rdoc

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("codified")

0.3.0 by Will Beasley, 4 years ago


https://ouhscbbmc.github.io/codified/, https://github.com/OuhscBbmc/codified, https://github.com/higgi13425/nih_enrollment_table


Report a bug at https://github.com/OuhscBbmc/codified/issues


Browse source code at https://github.com/cran/codified


Authors: Will Beasley [aut, cre] , Peter Higgins [ctb]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports checkmate, dplyr, kableExtra, knitr, rlang, tibble, tidyr

Suggests covr, readr, REDCapR, rmarkdown, testthat


See at CRAN