Stock Assessment Methods Toolkit

Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform data-rich fisheries. 'SAMtool' provides a conditioning model, assessment models of varying complexity with standardized reporting, model-based management procedures, and diagnostic tools for evaluating assessments inside closed-loop simulation.


Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.


1.1.2 by Quang Huynh, 3 months ago

Report a bug at

Browse source code at

Authors: Quang Huynh [aut, cre] , Tom Carruthers [aut] , Adrian Hordyk [aut]

Documentation:   PDF Manual  

GPL-3 license

Imports TMB, corpcor, dplyr, gplots, graphics, methods, rmarkdown, snowfall, stats, utils

Depends on MSEtool

Suggests caret, covr, ggplot2, knitr, mvtnorm, numDeriv, reshape2, shiny, testthat

Linking to TMB, RcppEigen

Depended on by openMSE.

See at CRAN