News

nandb 2.0.0

MAJOR CHANGES

• Robin Hood detrending is now used instead of exponential smoothing detrending. This is a breaking change.

NEW FEATURES

• The timeseries functions now have the option to overlap for better time resolution.
• A pkgdown website!

nandb 1.1.0

NEW FEATURES

• matrix_raster_plot() is back. I thought it didn't really fit but a user said they missed when it was gone so it's back now.

nandb 1.0.1

BUG FIXES

• Fix issues on CRAN linux devel clang.

nandb 1.0.0

NEW FEATURES

• The package is now peer-reviewed and published in the journal Bioinformatics. See citation("nandb").
• The package style is now in accordance with the tidyverse style guide.
• brightness() and number() now include options to set offset, S-factor, readout_noise and gamma correction terms.
• brightness() and number() now enable calculation of both definitions ("B" and "epsilon"; "N" and "n") of brightness and number.
• Detrending is outsourced to the detrendr package. This new package makes detrending more accurate and much faster.
• TIFF I/O and graphics display() are now outsourced to the ijtiff package. This means R users no longer have to tell nandb how many channels are in the images.
• The package now has its own S3 class system.

BUG FIXES

• Kmer calculations are no longer possible. The way in which they were done was over-simple.

nandb 0.2.1

BUG FIXES

• Compatible with filesstrings 1.1.0.

nandb 0.2.0

• The first version that I consider CRAN-worthy.

Reference manual