Number and Brightness Image Analysis

Calculation of molecular number and brightness from fluorescence microscopy image series. The software was published in a 2016 paper . The seminal paper for the technique is Digman et al. 2008 . A review of the technique was published in 2017 .


nandb

Calculation of molecular number and brightness from fluorescence microscopy image series. The software was published in a 2016 paper. The seminal paper for the technique is Digman et al. 2008. A review of the technique was published in 2017.

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Installation

You can install the release version of nandb from CRAN with:

install.packages("nandb")

You can install the (unstable) development version of nandb from GitHub with:

devtools::install_github("rorynolan/nandb")

I highly recommend using the release version. The dev version is just for the ultra-curious and should be thought of as unreliable.

How to use the package

See the package website at https://rorynolan.github.io/nandb/.

Contribution

Contributions to this package are welcome. The preferred method of contribution is through a github pull request. Feel free to contact me by creating an issue. Please note that this project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.

Reference manual

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install.packages("nandb")

2.1.1 by Rory Nolan, a year ago


https://rorynolan.github.io/nandb/, https://github.com/rorynolan/nandb


Report a bug at https://github.com/rorynolan/nandb/issues


Browse source code at https://github.com/cran/nandb


Authors: Rory Nolan [aut, cre, cph] (ORCID: , Luis Alvarez [ctb, cph] (ORCID: , Sergi Padilla-Parra [ctb, ths, cph] (ORCID:


Documentation:   PDF Manual  


BSD_3_clause + file LICENSE license


Imports assertthat, autothresholdr, BBmisc, checkmate, detrendr, dplyr, filesstrings, ggplot2, glue, ijtiff, magrittr, purrr, Rcpp, reshape2, rlang, stringr, utils, viridis, withr

Suggests abind, covr, gridExtra, knitr, magick, matrixStats, pacman, rmarkdown, spelling, testthat, tidyr

Linking to Rcpp


See at CRAN