An R Implementation of the 'Align-GVGD' Method

'Align-GVGD' ('A-GVGD') is a method to predict the impact of 'missense' substitutions based on the properties of amino acid side chains and protein multiple sequence alignments . 'A-GVGD' is an extension of the original 'Grantham' distance to multiple sequence alignments. This package provides an alternative R implementation to the web version found on < http://agvgd.hci.utah.edu/>.


Reference manual

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install.packages("agvgd")

0.1.2 by Ramiro Magno, 4 years ago


https://maialab.org/agvgd/, https://github.com/maialab/agvgd


Report a bug at https://github.com/maialab/agvgd/issues


Browse source code at https://github.com/cran/agvgd


Authors: Ramiro Magno [aut, cre] , Isabel Duarte [aut] , Ana-Teresa Maia [aut] , CINTESIS [cph, fnd]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports crayon, dplyr, glue, grantham, magrittr, purrr, rlang, seqinr, stringr, tibble, tidyr, vctrs

Suggests rmarkdown, covr, testthat


See at CRAN