Deep Learning Prediction of Effectors

A tool that contains trained deep learning models for predicting effector proteins. 'deepredeff' has been trained to identify effector proteins using a set of known experimentally validated effectors from either bacteria, fungi, or oomycetes. Documentation is available via several vignettes, and the paper by Kristianingsih and MacLean (2020) .


Reference manual

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0.1.1 by Ruth Kristianingsih, 3 months ago

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Authors: Ruth Kristianingsih [aut, cre, cph]

Documentation:   PDF Manual  

MIT + file LICENSE license

Imports Biostrings, dplyr, ggplot2, ggthemes, keras, magrittr, purrr, reticulate, rlang, seqinr, tensorflow

Suggests covr, kableExtra, knitr, rmarkdown, stringr, testthat

See at CRAN