Interactive Analysis of UCSC Xena Data

Provides functions and a Shiny application for downloading, analyzing and visualizing datasets from UCSC Xena (< http://xena.ucsc.edu/>), which is a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.


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Reference manual

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install.packages("UCSCXenaShiny")

1.1.3 by Shixiang Wang, 10 days ago


https://github.com/openbiox/UCSCXenaShiny


Report a bug at https://github.com/openbiox/UCSCXenaShiny/issues


Browse source code at https://github.com/cran/UCSCXenaShiny


Authors: Shixiang Wang [aut, cre] , Yi Xiong [aut] , Longfei Zhao [aut] , Kai Gu [aut] , Yin Li [aut] , Fei Zhao [aut]


Documentation:   PDF Manual  


GPL (>= 3) license


Imports dplyr, ezcox, forcats, ggplot2, ggpubr, magrittr, ppcor, psych, purrr, shiny, stats, stringr, tibble, tidyr, UCSCXenaTools, utils

Suggests covr, cowplot, DT, furrr, future, ggrepel, ggstatsplot, knitr, pacman, plotly, plyr, RColorBrewer, rmarkdown, scales, survival, survminer, testthat


See at CRAN