Stan-Based Fit to Gastric Emptying Curves

Stan-based curve-fitting function for use with package 'breathtestcore' by the same author. Stan functions are refactored here for easier testing.

breathteststan: Bayesian fit to 13C Breath Test Time series for gastric emptying

Dieter Menne
Menne Biomed Consulting Tübingen, Germany
[email protected]

Dieter Menne Menne Biomed Consulting Tübingen, Germany

[email protected]

Fit 13C time series data with Bayesian methods using Stan. This is an add-on to package breathtestcore. The Stan functions have been moved to this package to avoid long compile and test times. To test some of the functions with sample data or your own data, try the online demo.


Reference manual

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0.8.0 by Dieter Menne, a year ago

Report a bug at

Browse source code at

Authors: Dieter Menne [aut, cre] , Menne Biomed Consulting Tuebingen [cph] , Benjamin Misselwitz [fnd] , Mark Fox [fnd] , University Hospital of Zurich , Dep. Gastroenterology [fnd, dtc]

Documentation:   PDF Manual  

GPL (>= 3) license

Imports dplyr, purrr, rstan, rstantools, stringr, tibble, tidyr

Depends on methods, Rcpp

Suggests ggplot2, shinystan, bayesplot, testthat, covr, knitr, rmarkdown, breathtestcore

Linking to StanHeaders, rstan, BH, Rcpp, RcppEigen

System requirements: GNU make

Suggested by breathtestcore.

See at CRAN