Quantify Disease Transmission Within and Between Population Groups

A simple tool to quantify the amount of transmission of an infectious disease of interest occurring within and between population groups. 'bumblebee' uses counts of observed directed transmission pairs, identified phylogenetically from deep-sequence data or from epidemiological contacts, to quantify transmission flows within and between population groups accounting for sampling heterogeneity. Population groups might include: geographical areas (e.g. communities, regions), demographic groups (e.g. age, gender) or arms of a randomized clinical trial. See the 'bumblebee' website for statistical theory, documentation and examples < https://magosil86.github.io/bumblebee/>.


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Reference manual

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install.packages("bumblebee")

0.1.0 by Lerato E Magosi, a month ago


https://magosil86.github.io/bumblebee/


Report a bug at https://github.com/magosil86/bumblebee/issues


Browse source code at https://github.com/cran/bumblebee


Authors: Lerato E Magosi [aut] , Marc Lipsitch [aut] , Lerato E Magosi [cre]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports dplyr, gtools, Hmisc, magrittr, rmarkdown

Suggests covr, knitr, markdown, testthat


See at CRAN