Fast Likelihood Calculation for Phylogenetic Comparative Models

Provides a C++ backend for multivariate phylogenetic comparative models implemented in the R-package 'PCMBase'. Can be used in combination with 'PCMBase' to enable fast and parallel likelihood calculation. Implements the pruning likelihood calculation algorithm described in Mitov et al. (2018) . Uses the 'SPLITT' C++ library for parallel tree traversal described in Mitov and Stadler (2018) .


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0.1.9 by Venelin Mitov, a year ago,

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Authors: Venelin Mitov [aut, cre, cph] (<a href=""></a>)

Documentation:   PDF Manual  

GPL (>= 3.0) license

Imports PCMBase, data.table, abind

Depends on Rcpp, methods

Suggests testthat, knitr, rmarkdown, covr

Linking to Rcpp, RcppArmadillo

Suggested by mvSLOUCH.

See at CRAN