Fast Likelihood Calculation for Phylogenetic Comparative Models

Provides a C++ backend for multivariate phylogenetic comparative models implemented in the R-package 'PCMBase'. Can be used in combination with 'PCMBase' to enable fast and parallel likelihood calculation. Implements the pruning likelihood calculation algorithm described in Mitov et al. (2018) . Uses the 'SPLITT' C++ library for parallel tree traversal described in Mitov and Stadler (2018) .


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install.packages("PCMBaseCpp")

0.1.6 by Venelin Mitov, 7 days ago


https://github.com/venelin/PCMBaseCpp, https://venelin.github.io/PCMBase/


Report a bug at https://github.com/venelin/PCMBaseCpp/issues


Browse source code at https://github.com/cran/PCMBaseCpp


Authors: Venelin Mitov [aut, cre, cph]


Documentation:   PDF Manual  


GPL (>= 3.0) license


Imports PCMBase, data.table, abind

Depends on Rcpp, methods

Suggests testthat, knitr, rmarkdown, covr

Linking to Rcpp, RcppArmadillo


See at CRAN