Representing and Inferring Single-Cell Trajectories

Provides functionality to infer trajectories from single-cell data, represent them into a common format, and adapt them. Other biological information can also be added, such as cellular grouping, RNA velocity and annotation. Saelens et al. (2019) .


Reference manual

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1.2.2 by Robrecht Cannoodt, 7 months ago

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Authors: Robrecht Cannoodt [aut, cre] , rcannood) , Wouter Saelens [aut] , zouter)

Documentation:   PDF Manual  

MIT + file LICENSE license

Imports assertthat, babelwhale, crayon, dplyr, dynutils, dynparam, igraph, glue, magrittr, Matrix, methods, purrr, processx, readr, stringr, reshape2, tibble, tidyr, yaml

Suggests dyndimred, hdf5r, knitr, pkgload, ranger, rmarkdown, testthat

Imported by SCORPIUS, dynfeature, dynplot.

Suggested by dyngen.

See at CRAN