Estimate Time Varying Reproduction Numbers from Epidemic Curves

Tools to quantify transmissibility throughout an epidemic from the analysis of time series of incidence as described in Cori et al. (2013) and Wallinga and Teunis (2004) .


Reference manual

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2.2-4 by Anne Cori, 10 months ago

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Authors: Anne Cori [aut, cre] , Simon Cauchemez [ctb] , Neil M. Ferguson [ctb] , Christophe Fraser [ctb] , Elisabeth Dahlqwist [ctb] , P. Alex Demarsh [ctb] , Thibaut Jombart [ctb] , Zhian N. Kamvar [ctb] , Justin Lessler [ctb] , Shikun Li [ctb] , Jonathan A. Polonsky [ctb] , Jake Stockwin [ctb] , Robin Thompson [ctb] , Rolina van Gaalen [ctb]

Documentation:   PDF Manual  

GPL (>= 2) license

Imports coarseDataTools, stats, graphics, reshape2, ggplot2, gridExtra, fitdistrplus, coda, incidence, scales, grDevices

Suggests testthat, utils, vdiffr, covr, knitr, rmarkdown

Imported by covid19india, earlyR.

Suggested by projections.

See at CRAN