Run GWAS/GWEIS Scans Using Binary Dosage Files

Tools to run genome-wide association study (GWAS) and genome-wide by environment interaction study (GWEIS) scans using the genetic data stored in a binary dosage file. The user provides a data frame with the subject's covariate data and the information about the binary dosage file returned by the BinaryDosage::getbdinfo() routine.


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Reference manual

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install.packages("GxEScanR")

2.0.2 by John Morrison, 20 days ago


Browse source code at https://github.com/cran/GxEScanR


Authors: John Morrison [aut, cre] , NCI [fnd] (CA196559) , NCI [fnd] (CA201407) , NIEHS [fnd] (ES007048) , NHLBI [fnd] (HL115606)


Documentation:   PDF Manual  


GPL-3 license


Imports Rcpp, prodlim

Suggests BinaryDosage, testthat, covr, knitr, rmarkdown

Linking to Rcpp, RcppArmadillo


See at CRAN