Causal Batch Effects

Software which provides numerous functionalities for detecting and removing group-level effects from high-dimensional scientific data which, when combined with additional assumptions, allow for causal conclusions, as-described in our manuscripts Bridgeford et al. (2024) and Bridgeford et al. (2023) . Also provides a number of useful utilities for generating simulations and balancing covariates across multiple groups/batches of data via matching and propensity trimming for more than two groups.


Reference manual

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install.packages("causalBatch")

1.3.0 by Eric W. Bridgeford, 2 years ago


https://github.com/neurodata/causal_batch


Browse source code at https://github.com/cran/causalBatch


Authors: Eric W. Bridgeford [aut, cre] , Michael Powell [ctb] , Brian Caffo [ctb] , Joshua T. Vogelstein [ctb]


Documentation:   PDF Manual  


GPL-3 license


Imports cdcsis, sva, MatchIt, nnet, dplyr, magrittr, genefilter, BiocParallel, utils

Suggests tidyr, ggpubr, knitr, rmarkdown, parallel, testthat, covr, roxygen2, ks, ggplot2


See at CRAN