Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data

Functions for processing, analysis and visualization of Hydrogen Deuterium eXchange monitored by Mass Spectrometry experiments (HDX-MS) (10.1093/bioinformatics/btaa587). 'HaDeX' introduces a new standardized and reproducible workflow for the analysis of the HDX-MS data, including novel uncertainty intervals. Additionally, it covers data exploration, quality control and generation of publication-quality figures. All functionalities are also available in the in-built 'Shiny' app.


Reference manual

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1.2.2 by Weronika Puchala, 5 months ago

Browse source code at

Authors: Weronika Puchala [cre, aut] , Michal Burdukiewicz [aut] , Dominik Rafacz [ctb]

Documentation:   PDF Manual  

GPL-3 license

Imports data.table, dplyr, DT, ggplot2, gsubfn, latex2exp, reshape2, readr, readxl, shiny, stringr, tidyr

Suggests spelling, covr, digest, gridExtra, knitr, pander, renv, rmarkdown, shinycssloaders, shinyhelper, shinyjs, testthat, vdiffr

See at CRAN