Reference manual

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install.packages("igraph")

1.3.1 by Tamás Nepusz, a month ago


https://igraph.org, https://igraph.discourse.group/


Report a bug at https://github.com/igraph/rigraph/issues


Browse source code at https://github.com/cran/igraph


Authors: See AUTHORS file.


Documentation:   PDF Manual  


GPL (>= 2) license


Imports graphics, grDevices, magrittr, Matrix, pkgconfig, stats, utils

Depends on methods

Suggests ape, graph, igraphdata, rgl, scales, stats4, tcltk, testthat, withr, digest

System requirements: gmp (optional), libxml2 (optional), glpk (>= 4.57, optional), C++11


Imported by AFM, AnimalHabitatNetwork, BASiNET, BASiNETEntropy, BCT, BDgraph, BPEC, BSBT, BacArena, BallMapper, BayesMRA, BayesMallows, BayesNetBP, BayesSUR, Bioi, Bios2cor, BoolNet, C443, CARlasso, CIDER, CINNA, CKMRpop, Canek, Cascade, CePa, CeRNASeek, CliquePercolation, ClusTorus, ClustAssess, CoDiNA, CoNI, Corbi, DCD, DCLEAR, DDPNA, DIscBIO, DNLC, DRviaSPCN, DiagrammeR, DiffNet, DirectedClustering, DrDimont, ECoL, EDOIF, EGAnet, EcoNetGen, EcotoneFinder, EmbedSOM, EpiILMCT, EstimateGroupNetwork, FCMapper, FedData, FindIt, ForestGapR, FrF2, GMPro, GOCompare, GOxploreR, GREMLINS, HLSM, HTSSIP, HeteroGGM, ICDS, IDSpatialStats, IMEC, ITNr, IxPopDyMod, Jdmbs, LSVAR, LoopDetectR, MBNMAdose, MRFcov, MRReg, MRS, MTA, Mercator, MultIS, NFP, NIMAA, NetCoupler, NetFACS, NetMix, NetOrigin, NetSci, NetworkChange, NetworkDistance, NetworkToolbox, OCNet, ORION, OmicInt, OpasnetUtils, OpenRepGrid.ic, PAC, PAFit, PGRdup, PLNmodels, POSetR, PanelMatch, Patterns, PlackettLuce, ProjectManagement, QuACN, R.temis, R6causal, RDS, RNAseqNet, RaceID, Radviz, RavenR, RcextTools, RcmdrPlugin.RMTCJags, ReDaMoR, RepertoiR, RevEcoR, Rnmr1D, SBN, SEMID, SIRE, SLICER, SNscan, SOAs, SSN, STraTUS, ScorePlus, SelectBoost, SemNeT, SeqDetect, SeqNet, SetRank, Seurat, SignacX, SmCCNet, SoilR, SourceSet, SpaDES.core, SpatialGraph, SubtypeDrug, SurvHiDim, SystemicR, TAShiny, TDA, TOHM, TPEA, Tlasso, TreeDimensionTest, VARDetect, VOSONDash, VertexSimilarity, WebGestaltR, adegenet, akc, alakazam, anipaths, apisensr, arulesViz, autoharp, backShift, backbone, basket, baycn, bcgam, beam, betalink, bibliometrix, bifurcatingr, bipartite, bnma, bnviewer, bootcluster, bootnet, btergm, bwsTools, cRegulome, cancerGI, cape, cartograflow, causact, causalDisco, causaleffect, ccTensor, cholera, clustree, clustringr, comato, communication, concatipede, concorR, contact, corHMM, corTest, corpustools, crandep, cranly, crimelinkage, criticalpath, cytometree, deaR, degreenet, delayed, dexterMST, diffeRenTES, diffudist, diffusionMap, diffusr, discourseGT, discretecdAlgorithm, dm, dnapath, dnr, doolkit, dragon, drake, dynetNLAResistance, dyngen, dynplot, dynwrap, ecoCopula, econet, economiccomplexity, edgebundle, edgebundleR, edmcr, eff2, einet, emba, epicontacts, epinetr, erah, ergmclust, ess, evolqg, exp2flux, factorEx, fairadapt, fakemake, fastRG, fastnet, fbRanks, foodingraph, forestRK, fossilbrush, fssemR, funtimes, gDefrag, gRain, gRbase, gRim, gamCopula, gemtc, genBaRcode, geonet, geonetwork, ggdag, ggenealogy, ggm, ggnetwork, ggraph, gimme, gmat, grainscape, graph4lg, graphTweets, graphicalExtremes, graphicalVAR, graphlayouts, graphsim, gromovlab, handwriter, hergm, highcharter, hisse, huge, iCARH, iCellR, iGraphMatch, iconr, icosa, igraphinshiny, imager, immunarch, immuneSIM, imsig, incidentally, influenceR, influential, inlmisc, intensitynet, intergraph, jti, kangar00, keyplayer, kknn, kstMatrix, l1spectral, lconnect, leiden, leidenAlg, leidenbase, lexRankr, linkprediction, lvm4net, madrat, malan, margaret, markovchain, matie, mau, maxmatching, mazeGen, mcvis, metacoder, migraph, miniCRAN, missSBM, mitre, modnets, molnet, motifcluster, motifr, mppR, mstknnclust, mully, multilaterals, multinets, multinma, multivariance, mverse, mwTensor, mwcsr, nat, nat.templatebrains, neat, neatmaps, neo4r, netCoin, netchain, netdiffuseR, netgen, netgsa, netgwas, netjack, netmap, netplot, netrankr, netropy, nets, netseg, networkD3, networkGen, networktools, nevada, nimble, nlnet, nlrx, node2vec, nutriNetwork, pald, particles, pathfindR, pcFactorStan, pcalg, pencopulaCond, perturbR, phangorn, phyloTop, phylopath, phyloregion, phyloseqGraphTest, phylosignal, piecewiseSEM, pkggraph, pkgnet, plinkQC, pmd, polymapR, pomdp, pop, poppr, prioritizr, propr, provGraphR, psSubpathway, ptm, qdap, qgraph, quanteda.textplots, quickPlot, rD3plot, rPref, rags2ridges, rcrimeanalysis, rescue, rflexscan, rgexf, rhcoclust, rmangal, rmcfs, rmonad, robber, robustrao, roots, roprov, rscc, rsetse, rsppfp, rsyntax, sBIC, safedata, saotd, sbm, scDHA, scINSIGHT, scRNAtools, scalpel, sccore, secrlinear, semPlot, seqHMM, sfcr, sfnetworks, sharpshootR, shazam, shock, sidier, sigmajs, signnet, simPATHy, simer, smotefamily, snahelper, snowboot, solitude, spNetwork, spacejamr, spathial, spatsoc, specr, spqdep, spreadr, spruce, statGraph, stemmatology, stminsights, targets, text2map, textrank, tidySEM, tidygraph, tilemaps, topoDistance, tosr, treefit, treemap, vennLasso, vivid, vosonSML, wTO, whitechapelR, wiseR, wpa, xLLiM.

Depended on by AurieLSHGaussian, BNSL, Boptbd, Diderot, DiffCorr, DynComm, ESEA, FisHiCal, GADAG, GNAR, HyperG, JGL, JointNets, LEANR, LPKsample, LncPath, MEGENA, MNS, MetaLandSim, NEpiC, NetSwan, OutrankingTools, PhaseTypeR, RCA, RNetLogo, RNewsflow, RWBP, SARP.compo, SEMgraph, SOMbrero, SVN, ShapePattern, SteinerNet, SubpathwayGMir, SubpathwayLNCE, VertexSort, archeofrag, bayesloglin, bc3net, bnstruct, brainGraph, c3net, causaloptim, cccd, centiserve, cglasso, clickstream, clustAnalytics, conos, cooptrees, corclass, coreCT, corkscrew, dc3net, dcGOR, diffee, dils, disparityfilter, dnet, ebdbNet, editrules, epistasis, fanovaGraph, fasjem, fastclime, flare, func2vis, gdistance, genlasso, graphkernels, habCluster, hglasso, iDINGO, igraphtosonia, immcp, jeek, linkcomm, locits, mRMRe, manet, massiveGST, micropan, modMax, morph, multichull, multinet, netassoc, optbdmaeAT, optrcdmaeAT, optrees, pagoda2, parsec, pcSteiner, postHoc, qtlnet, rEMM, ragt2ridges, regmed, robin, sand, sglasso, shp2graph, simule, sindyr, soptdmaeA, threejs, timeordered, tnet, wfg.

Suggested by BiCausality, BiodiversityR, BoomSpikeSlab, CNVScope, ConnMatTools, CovCombR, DGCA, DramaAnalysis, FCPS, GGally, HelpersMG, IOHanalyzer, Libra, MBNMAtime, MSG, NetworkInference, NetworkRiskMeasures, PairViz, Platypus, RScelestial, Rwclust, Ryacas, Ryacas0, SFSI, SITH, TDAmapper, TNC, TextMiningGUI, TunePareto, agop, anocva, ape, autostats, bcp, beadplexr, bio3d, blackbox, bnlearn, breathteststan, bsub, ccdrAlgorithm, cfid, cppRouting, cspp, d3po, datapack, dbscan, deepdep, dimRed, diverse, doMIsaul, dodgr, dosearch, dst, dynatopGIS, dyndimred, econullnetr, ecospat, ecpc, egor, eicm, epigraphdb, factoextra, fsbrain, functiondepends, genscore, ggokabeito, ghypernet, graphon, greed, hero, hydra, igraphdata, industRial, invertiforms, isa2, isotracer, knitrBootstrap, latrend, lava, lfe, loe, lolog, maotai, metadat, microeco, miic, mlr3pipelines, molic, multifear, nbTransmission, net4pg, netcmc, netmeta, nosoi, oaqc, osmar, outbreaker2, paramlink, pbixr, pedmod, pedtools, pkgndep, polmineR, polyqtlR, primer, protti, rIsing, rangeMapper, raster, rbmn, readsdr, recipes, redist, repo, rgraph6, rnetcarto, rquery, rtweet, rvinecopulib, scDiffCom, secuTrialR, sensitivity, sirt, sparsebnUtils, spatialreg, spdep, spdynmod, spectralGraphTopology, stabm, stagedtrees, stampr, stm, stplanr, surface, terra, textmineR, textplot, tgver, tidyjson, treespace, visNetwork, vkR, vocaldia, vsp, widyr, wildlifeDI, xgboost.

Enhanced by Matrix, d3r, data.tree, rviewgraph.


See at CRAN