Reconstruction of Clones from Integration Site Readouts and Visualization

Tools necessary to reconstruct clonal affiliations from temporally and/or spatially separated measurements of viral integration sites. For this means it utilizes correlations present in the relative readouts of the integration sites. Furthermore, facilities for filtering of the data and visualization of different steps in the pipeline are provided with the package.


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install.packages("MultIS")

0.6.2 by Sebastian Wagner, a month ago


Browse source code at https://github.com/cran/MultIS


Authors: Sebastian Wagner [cre, aut] , Christoph Baldow [aut] , Ingmar Glauche [ths]


Documentation:   PDF Manual  


LGPL license


Imports clValid, cluster, clv, dplyr, foreach, ggplot2, igraph, ltm, plyr, poweRlaw, reshape2, RColorBrewer, rlang, rmutil

Suggests knitr, markdown, mclust, testthat, gridExtra


See at CRAN