Network-Based Gene Set Analysis

Carry out Network-based Gene Set Analysis by incorporating external information about interactions among genes, as well as novel interactions learned from data.


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Reference manual

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install.packages("netgsa")

3.1.0 by Jing Ma, a month ago


https://github.com/drjingma/netgsa


Browse source code at https://github.com/cran/netgsa


Authors: Jing Ma , Ali Shojaie and Kun Yue


Documentation:   PDF Manual  


GPL (>= 2) license


Imports graph, graphite, corpcor, dplyr, glmnet, glassoFast, igraph, Matrix, msigdbr, quadprog, rlang, magrittr

Suggests knitr, MASS, rmarkdown


See at CRAN