Linkage Analysis in Outcrossing Polyploids

Creation of linkage maps in polyploid species from marker dosage scores of an F1 cross from two heterozygous parents. Currently works for outcrossing diploid, autotriploid, autotetraploid and autohexaploid species, as well as segmental allotetraploids. Methods are described in a manuscript of Bourke et al. (2018) .


Reference manual

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1.0.20 by Peter Bourke, a month ago

Browse source code at

Authors: Peter Bourke [aut, cre] , Geert van Geest [aut] , Roeland Voorrips [ctb]

Documentation:   PDF Manual  

GPL license

Imports igraph, doParallel, foreach, knitr, combinat, MDSMap

Suggests rmarkdown, Hmisc, LPmerge, reshape2, RColorBrewer, hexbin

See at CRAN