The First Software for Quantitative Trajectory Inference

Perform two types of analysis: 1) checking the goodness-of-fit of tree models to your single-cell gene expression data; and 2) deciding which tree best fits your data.


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install.packages("treefit")

1.0.0 by Kouhei Sutou, 6 months ago


https://hayamizu-lab.github.io/treefit-r/, https://github.com/hayamizu-lab/treefit-r/


Report a bug at https://github.com/hayamizu-lab/treefit-r/issues


Browse source code at https://github.com/cran/treefit


Authors: Momoko Hayamizu [aut] , Kouhei Sutou [aut, cre]


Documentation:   PDF Manual  


GPL (>= 3) license


Imports ggplot2, igraph, patchwork, pracma

Suggests Seurat, gridExtra, knitr, qpdf, rmarkdown, testthat


See at CRAN