The First Software for Quantitative Trajectory Inference

Perform two types of analysis: 1) checking the goodness-of-fit of tree models to your single-cell gene expression data; and 2) deciding which tree best fits your data.


Reference manual

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1.0.0 by Kouhei Sutou, a year ago,

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Browse source code at

Authors: Momoko Hayamizu [aut] , Kouhei Sutou [aut, cre]

Documentation:   PDF Manual  

GPL (>= 3) license

Imports ggplot2, igraph, patchwork, pracma

Suggests Seurat, gridExtra, knitr, qpdf, rmarkdown, testthat

See at CRAN