Tools for Earth Meteorological Analysis

Contains many functions useful for managing 'NetCDF' files (see < http://en.wikipedia.org/wiki/NetCDF>), get tide levels on any point of the globe, get moon phase and time for sun rise and fall, analyse and reconstruct periodic time series of temperature with irregular sinusoidal pattern, show scales and wind rose in plot with change of color of text, Metropolis-Hastings algorithm for Bayesian MCMC analysis, plot graphs or boxplot with error bars, search files in disk by there names or their content, read the contents of all files from a folder at one time.


News

THIS IS THE CHANGELOG OF THE "HelpersMG" PACKAGE

        CHANGES IN VERSION 3.0    (2017-11-02)
  • New functions for Iconography of correlations - 3.0

          CHANGES IN VERSION 2.0 - 2.0.3    (2017-10-19)
    
  • SEfromHessian is more general - 2.0

  • extractAIC.glm() to use AICc with stepAIC() from MASS package - 2.0

  • invlogit() and logit() functions - 2.0

  • read.folder() does not change working directory if error occurs - 2.0

  • new function ellipse() to draw an ellipse - 2.0

  • Minor change for compare_AICc - 2.0

  • Bug correction in ind_long_lat when indices were supplied - 2.0.1

  • ind_long_lat can work with only ncdf4 or RnetCDF package - 2.0.2 and 2.0.3

          CHANGES IN VERSION 1.9.2    (2017-05-14)
    
  • New version for CRAN - 1.9

  • BatchSE is not calculated during merge to prevent an error - 1.9.1

  • SEfromHessian function to estimate SE from Hessian matrix - 1.9.2

          CHANGES IN VERSION 1.8-1.8.10    (2017-02-17)
    
  • New version for CRAN - 1.8

  • New version of the shiny compare - 1.8.1

  • Functions contingencyTable.compare() and series.compare() - 1.8.2

  • Allow NA in data.frame send to series.compare() - 1.8.3

  • Example for dSnbinom() is added - 1.8.4

  • Minor change in compare() and mcmc functions - 1.8.5

  • Cosmetic change in compare() - 1.8.6

  • New hidden function for non-linear estimation of confidence interval - 1.8.7

  • New hidden functions to estimate random number with vcov matrix - 1.8.8

  • Remove the last change (1.8.8) because package lmf does better job - 1.8.9

  • New function compare_AICc() - 1.8.10

          CHANGES IN VERSION 1.7-1.7.9    (2016-12-25)
    
  • Change in .radioButtons_withHTML() to pass the check for CRAN - 1.7

  • plot.mcmccomposite() accept only one variable - 1.7.1

  • New hidden function .Arrows() - 1.7.2

  • New function r2norm() - 1.7.3

  • Acceleration of MHalgoGen() - 1.7.4

  • adaptive mcmc option for SDProp - 1.7.4

  • SDProp.end element of result list from MHalgoGen() is a named vector - 1.7.5

  • plot.mcmcComposite() shows a second scale if scale.prior is TRUE - 1.7.6

  • New function compare_BIC() - 1.7.7

  • New function table.comparison() and data.comparison() - 1.7.8

  • New shiny function compare() - 1.7.8

  • Minor change for as.parameter() - 1.7.9

          CHANGES IN VERSION 1.6.2    (2016-08-14)
    
  • Minor update in documentation for MHAlgoGen - 1.6.1

  • New hiden function .radioButtons_withHTML() - 1.6.2

          CHANGES IN VERSION 1.6    (2016-07-17)
    
  • Minor update in documentation - 1.5.1

  • New functions symbol.Male() and symbol.Female() - 1.5.2

  • Bug correction for plot.mcmcComposite() - 1.5.2

  • Warning when dSnbinom() return-Inf - 1.5.3

  • New function modeled.hist() - 1.5.4

  • Function dist.entropic() renamed DIx() - 1.5.5

  • Correct a bug in MHAlgoGen() that prevented the use of other parameters - 1.5.6

  • plot_errbar() plots the points afer drawing the error bars - 1.5.7

  • The scale for plot_errbar() takes into account the error bars - 1.5.7

  • Modification of DIx() index to better reflect the expectation for this index - 1.5.8

  • Two versions of the DIx() index based on version parameter - 1.6

          CHANGES IN VERSION 1.4-1.4.10    (2016-03-31)
    
  • Optimization of dmnbinom() for Density of Multiple Negative Binomial distribution - 1.4

  • New function dist.entropic() to quantify complexity of set of objects - 1.4.1

  • Optimization of dmnbinom() for Density of Multiple Negative Binomial distribution when all prob are identical - 1.4.2

  • New functions rmnbinom(), pmnbinom(), qmnbinom() - 1.4.3

  • rmnbinom() works for n=1 - 1.4.4

  • xmnbinom() are renamed as xSnbinom() - 1.4.5

  • which2D() is removed because which() does the same - 1.4.6

  • read_folder() works faster - 1.4.6

  • symmetricize() function from package discontinuited ENA is added - 1.4.7

  • English edition for some vignettes - 1.4.8

  • Better initial tests for parameters of xSnbinom() - 1.4.9

  • New parameter details for dist.entropic() - 1.4.10

  • Correct problem if prob==1 in dSnbinom() - 1.4.10

          CHANGES IN VERSION 1.3-1.3.4    (2016-01-07)
    
  • Minor change for ... managing in wget() - 1.3

  • Correct a bug for MHalgoGen() when previous parameter is used - 1.3.1

  • compassRose2() and map.scale2() are changed to newcompassRose() and newmap.scale() respectively - 1.3.2

  • new function which2D() to search within the matrix or data.frame objects - 1.3.3

  • new function modifyVector() similar to modifyList() for vectors - 1.3.3

  • new function dmnbinom() for Density of Multiple Negative Binomial distribution - 1.3.4

          CHANGES IN VERSION 1.2.1-1.2.3    (2015-10-08)
    
  • Correct a bug for LD50 fit of initial parameters

  • Correct vignette for sun.info()

  • New function wget to download a file using ftp

  • correct a bug in MHalgoGen() output

          CHANGES IN VERSION 1.2    (2015-06-29)
    
  • New LD50(), predict.LD50(), logLik.LD50() and plot.LD50() functions

  • Better description for Periodic patterns of indices functions

  • plot=TRUE shows the fit using by minmax.periodic()

  • temperature.periodic() renamed index.periodic() because it can be used with tide.info()

  • moon_phase() is renamed moon.info() to be consistent with sun.info()

  • getTide() is renamed tide.info() to be consistent with sun.info()

          CHANGES IN VERSION 1.1    (2015-05-17)
    
  • barplot_errbar() returns a data.frame with the centers of the bars as barplot does

  • MGalgoGen() better send parameters to likelihood function

  • The lastest version can always been installed using: install.packages("http://www.ese.u-psud.fr/epc/conservation/CRAN/HelpersMG.tar.gz", repos=NULL, type="source")

          CHANGES IN VERSION 1.0    (2015-04-07)
    
  • First version. All the functions were included before in embryogrowth or phenology packages. Changes reported for version 1 are as compared to versions included in previous packages.

  • New examples for mcmcComposite objects

  • Better managment of n.adapt for MHalgoGen() and this function is no more hidden

  • Add a progressbar for functions managing daily patterns of temperatures

  • Add new parameters for insidesearch() to better manage the files filtering

  • New function similar()

  • Add the ... parameter for as.mcmc()

  • Correct a bug for plot.mccmComposite when then parameter value is negative

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("HelpersMG")

3.2 by Marc Girondot, 10 days ago


Browse source code at https://github.com/cran/HelpersMG


Authors: Marc Girondot


Documentation:   PDF Manual  


GPL-2 license


Depends on coda

Suggests RNetCDF, ncdf4, maps, XML, fields, shiny, Matrix, ppcor, pbmcapply, parallel, visNetwork, igraph


Depended on by embryogrowth, phenology.


See at CRAN