Reference manual

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install.packages("pagoda2")

1.0.10 by Evan Biederstedt, 2 months ago


https://github.com/kharchenkolab/pagoda2


Report a bug at https://github.com/kharchenkolab/pagoda2/issues


Browse source code at https://github.com/cran/pagoda2


Authors: Nikolas Barkas [aut] , Viktor Petukhov [aut] , Peter Kharchenko [aut] , Simon Steiger [ctb] , Evan Biederstedt [cre, aut]


Documentation:   PDF Manual  


GPL-3 license


Imports dendsort, drat, fastcluster, graphics, grDevices, irlba, magrittr, MASS, mgcv, methods, N2R, parallel, plyr, R.utils, Rcpp, rjson, rlang, R6, RMTstat, Rook, Rtsne, sccore, stats, urltools, utils

Depends on Matrix, igraph

Suggests AnnotationDbi, base64enc, BiocGenerics, BiocParallel, colorRamps, data.table, dbscan, dplyr, ggplot2, GO.db, gridExtra, KernSmooth, knitr, org.Dr.eg.db, org.Hs.eg.db, org.Mm.eg.db, pcaMethods, pheatmap, rgl, rmarkdown, robustbase, scde, testthat, uwot

Linking to Rcpp, RcppArmadillo, RcppProgress, RcppEigen


Suggested by conos, scITD.


See at CRAN