Microbial Community Ecology Data Analysis

A series of statistical and plotting approaches in microbial community ecology based on the R6 class. The classes are designed for data preprocessing, taxa abundance plotting, alpha diversity statistics, beta diversity statistics, differential abundance test and indicator taxon analysis, environmental data analysis, null model analysis, network analysis and functional analysis.


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Reference manual

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install.packages("microeco")

0.3.1 by Chi Liu, a day ago


Browse source code at https://github.com/cran/microeco


Authors: Chi Liu [aut, cre] , Minjie Yao [aut] , Xiangzhen Li [aut] , Paul J. McMurdie [ctb] , Yang Cao [ctb] , James Robert White [ctb] , Stilianos Louca [cph] , Nhu H. Nguyen [cph]


Documentation:   PDF Manual  


GPL-3 license


Imports R6, stats, ape, vegan, rlang, data.table, magrittr, dplyr, tibble, scales, grid, ggplot2, RColorBrewer

Suggests reshape2, GUniFrac, MASS, ggpubr, randomForest, ggdendro, ggrepel, agricolae, gridExtra, picante, pheatmap, igraph, rgexf, tidytree, mice, ggtree, phyloseq


See at CRAN