Inference of Species Associations from Co-Occurrence Data

Infers species associations from community matrices. Uses local and (optional) regional-scale co-occurrence data by comparing observed partial correlation coefficients between species to those estimated from regional species distributions. Extends Gaussian graphical models to a null modeling framework. Provides interface to a variety of inverse covariance matrix estimation methods.


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install.packages("netassoc")

0.6.3 by Benjamin Blonder, 2 years ago


Browse source code at https://github.com/cran/netassoc


Authors: Benjamin Blonder , Naia Morueta-Holme


Documentation:   PDF Manual  


GPL-3 license


Imports corpcor, huge, vegan

Depends on igraph, infotheo


See at CRAN