Inference of Species Associations from Co-Occurrence Data

Infers species associations from community matrices. Uses local and (optional) regional-scale co-occurrence data by comparing observed partial correlation coefficients between species to those estimated from regional species distributions. Extends Gaussian graphical models to a null modeling framework. Provides interface to a variety of inverse covariance matrix estimation methods.


Reference manual

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0.6.3 by Benjamin Blonder, 3 years ago

Browse source code at

Authors: Benjamin Blonder , Naia Morueta-Holme

Documentation:   PDF Manual  

GPL-3 license

Imports corpcor, huge, vegan

Depends on igraph, infotheo

See at CRAN