Graphical Modelling and Ordination using Copulas

Creates 'graphs' of species associations (interactions) and ordination biplots from co-occurrence data by fitting discrete gaussian copula graphical models. Methods described in Popovic, GC., Hui, FKC., Warton, DI., (2018) .


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Reference manual

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install.packages("ecoCopula")

1.0.1 by Gordana Popovic, 23 days ago


Browse source code at https://github.com/cran/ecoCopula


Authors: Gordana Popovic [aut, cre] , Michelle Lim [ctb] , Francis K.C. Hui [ctb]


Documentation:   PDF Manual  


LGPL (>= 2.1) license


Imports mvabund, glasso, plyr, sna, MASS, tweedie, igraph, betareg, doParallel, mgcv, glm2, ordinal, compiler, foreach, stats

Suggests knitr, rmarkdown, testthat, tidyr, ggplot2, RColorBrewer, ggraph, labdsv, tidygraph


See at CRAN