Graphical Modelling and Ordination using Copulas

Creates 'graphs' of species associations (interactions) and ordination biplots from co-occurrence data by fitting discrete gaussian copula graphical models. Methods described in Popovic, GC., Hui, FKC., Warton, DI., (2018) .


Reference manual

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1.0.1 by Gordana Popovic, 10 months ago

Browse source code at

Authors: Gordana Popovic [aut, cre] , Michelle Lim [ctb] , Francis K.C. Hui [ctb]

Documentation:   PDF Manual  

LGPL (>= 2.1) license

Imports mvabund, glasso, plyr, sna, MASS, tweedie, igraph, betareg, doParallel, mgcv, glm2, ordinal, compiler, foreach, stats

Suggests knitr, rmarkdown, testthat, tidyr, ggplot2, RColorBrewer, ggraph, labdsv, tidygraph

Imported by ecopower.

See at CRAN