Graphical Modelling and Ordination using Copulas

Creates 'graphs' of species associations (interactions) and ordination biplots from co-occurrence data by fitting discrete gaussian copula graphical models. Methods described in Popovic, GC., Hui, FKC., Warton, DI., (2018) .


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Reference manual

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install.packages("ecoCopula")

1.0.1 by Gordana Popovic, 10 months ago


Browse source code at https://github.com/cran/ecoCopula


Authors: Gordana Popovic [aut, cre] , Michelle Lim [ctb] , Francis K.C. Hui [ctb]


Documentation:   PDF Manual  


LGPL (>= 2.1) license


Imports mvabund, glasso, plyr, sna, MASS, tweedie, igraph, betareg, doParallel, mgcv, glm2, ordinal, compiler, foreach, stats

Suggests knitr, rmarkdown, testthat, tidyr, ggplot2, RColorBrewer, ggraph, labdsv, tidygraph


Imported by ecopower.


See at CRAN