Single Cell RNA Sequencing Data Analysis Tools

We integrated the common analysis methods utilized in single cell RNA sequencing data, which included cluster method, principal components analysis (PCA), the filter of differentially expressed genes, pathway enrichment analysis and correlated analysis methods.


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Reference manual

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install.packages("scRNAtools")

1.0 by Qian Yang, a year ago


Browse source code at https://github.com/cran/scRNAtools


Authors: Qian Yang


Documentation:   PDF Manual  


GPL-2 license


Imports ALL, ConsensusClusterPlus, scatterplot3d, ggplot2, Rtsne, limma, edgeR, TPEA, Rmisc, lattice, plyr, ggthemes, reshape2, PerformanceAnalytics, corrplot, Hmisc, igraph, survival

Depends on foreach, base

Suggests grid


See at CRAN