Single Cell RNA Sequencing Data Analysis Tools

We integrated the common analysis methods utilized in single cell RNA sequencing data, which included cluster method, principal components analysis (PCA), the filter of differentially expressed genes, pathway enrichment analysis and correlated analysis methods.


Reference manual

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1.0 by Qian Yang, 3 years ago

Browse source code at

Authors: Qian Yang

Documentation:   PDF Manual  

GPL-2 license

Imports ALL, ConsensusClusterPlus, scatterplot3d, ggplot2, Rtsne, limma, edgeR, TPEA, Rmisc, lattice, plyr, ggthemes, reshape2, PerformanceAnalytics, corrplot, Hmisc, igraph, survival

Depends on foreach, base

Suggests grid

See at CRAN