A comprehensive and easy to use R implementation of confirmatory
phylogenetic path analysis as described by Von Hardenberg and Gonzalez-Voyer
IMPORTANT: Faulty model averaging has been fixed. This was often introduced due to differences in matrix ordering. Avering results from versions before 0.2.1 should NOT be trusted.
ape::corBrownian() no longer returns an error.
Averaging is less likely to fail due to errors in
phylo_path() has become more streamlined with functionality moved to other
phylopath object now containts all necessary models and data,
summary() is used to obtain the results table, and
are used to extract and fit the best or average model. See the vignette for
Model averaging for arbitrary models is now possible with
Model averaging now supports both conditional and full model averaging.
Both the old
est_DAG() and the new
average_DAGs() now return objects of a
fitted_DAG, that has it's seperate
plot method. The
method for objects of class
DAG has been simplified.
Model averaging now returns standard errors and confidence intervals based on
MuMIn package (issue #1).
A new function
plot_coefs for plotting regression coefficients and their
confidence intervals has been added.