Reference manual

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4.2.0 by Paul Hoffman, 10 days ago,

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Authors: Andrew Butler [ctb] , Saket Choudhary [ctb] , Charlotte Darby [ctb] , Jeff Farrell [ctb] , Christoph Hafemeister [ctb] , Yuhan Hao [ctb] , Paul Hoffman [aut, cre] , Jaison Jain [ctb] , Efthymia Papalexi [ctb] , Patrick Roelli [ctb] , Rahul Satija [ctb] , Karthik Shekhar [ctb] , Avi Srivastava [ctb] , Tim Stuart [ctb] , Kristof Torkenczy [ctb] , Shiwei Zheng [ctb] , Satija Lab and Collaborators [fnd]

Documentation:   PDF Manual  

MIT + file LICENSE license

Imports cluster, cowplot, fitdistrplus, future, future.apply, ggplot2, ggrepel, ggridges, graphics, grDevices, grid, httr, ica, igraph, irlba, jsonlite, KernSmooth, leiden, lmtest, MASS, Matrix, matrixStats, miniUI, patchwork, pbapply, plotly, png, RANN, RColorBrewer, Rcpp, RcppAnnoy, reticulate, rlang, ROCR, Rtsne, scales, scattermore, sctransform, SeuratObject, shiny, spatstat.core, spatstat.geom, stats, tibble, tools, utils, uwot

Depends on methods

Suggests ape, rsvd, testthat, hdf5r, S4Vectors, SummarizedExperiment, SingleCellExperiment, MAST, DESeq2, BiocGenerics, GenomicRanges, GenomeInfoDb, IRanges, rtracklayer, Rfast2, monocle, Biobase, VGAM, limma, metap, enrichR, mixtools, ggrastr

Linking to Rcpp, RcppEigen, RcppProgress

Imported by CAMML, CIDER, CSCDRNA, DR.SC, DUBStepR, DWLS, PALMO, PRECAST, Platypus, SCRIP, SignacX, SoupX, bbknnR, maple, rPanglaoDB, scAnnotate, scDiffCom, scMappR, scRNAstat, scpoisson, spruce, tidyseurat.

Depended on by CACIMAR.

Suggested by BisqueRNA, CIARA, Canek, ClustAssess, DIscBIO, Rmagic, Signac, VAM, cellpypes, clustree, conos, countland, grandR, harmony, rliger, treefit.

See at CRAN