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4.3.0.1 by Paul Hoffman, 3 months ago
https://satijalab.org/seurat, https://github.com/satijalab/seurat
Report a bug at https://github.com/satijalab/seurat/issues
Browse source code at https://github.com/cran/Seurat
Authors: Andrew Butler [ctb] , Saket Choudhary [ctb] , Charlotte Darby [ctb] , Jeff Farrell [ctb] , Christoph Hafemeister [ctb] , Yuhan Hao [ctb] , Austin Hartman [ctb] , Paul Hoffman [aut, cre] , Jaison Jain [ctb] , Madeline Kowalski [ctb] , Efthymia Papalexi [ctb] , Patrick Roelli [ctb] , Rahul Satija [ctb] , Karthik Shekhar [ctb] , Avi Srivastava [ctb] , Tim Stuart [ctb] , Kristof Torkenczy [ctb] , Shiwei Zheng [ctb] , Satija Lab and Collaborators [fnd]
Documentation: PDF Manual
MIT + file LICENSE license
Imports cluster, cowplot, fitdistrplus, future, future.apply, ggplot2, ggrepel, ggridges, graphics, grDevices, grid, httr, ica, igraph, irlba, jsonlite, KernSmooth, leiden, lmtest, MASS, Matrix, matrixStats, miniUI, patchwork, pbapply, plotly, png, progressr, RANN, RColorBrewer, Rcpp, RcppAnnoy, reticulate, rlang, ROCR, Rtsne, scales, scattermore, sctransform, SeuratObject, shiny, spatstat.explore, spatstat.geom, stats, tibble, tools, utils, uwot
Depends on methods
Suggests ape, rsvd, testthat, hdf5r, S4Vectors, SummarizedExperiment, SingleCellExperiment, MAST, DESeq2, BiocGenerics, GenomicRanges, GenomeInfoDb, IRanges, rtracklayer, Rfast2, monocle, Biobase, VGAM, limma, metap, enrichR, mixtools, ggrastr, data.table, R.utils
Linking to Rcpp, RcppEigen, RcppProgress
Imported by AnanseSeurat, CAMML, CIDER, CSCDRNA, DR.SC, DWLS, PRECAST, ProFAST, SCRIP, SPECK, STREAK, SignacX, SoupX, bbknnR, ggsector, gsdensity, mixhvg, rPanglaoDB, scAnnotate, scDiffCom, scGate, scMappR, scRNAstat, scperturbR, scpoisson.
Depended on by CACIMAR, scCustomize.
Suggested by BisqueRNA, CIARA, CRMetrics, Canek, ClustAssess, DIscBIO, RESET, SCORPIUS, SCpubr, Signac, VAM, cellpypes, clustree, combiroc, conos, countland, dyngen, grandR, harmony, rliger, treefit.
See at CRAN