Reference manual

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install.packages("Seurat")

4.1.1 by Paul Hoffman, 15 days ago


https://satijalab.org/seurat, https://github.com/satijalab/seurat


Report a bug at https://github.com/satijalab/seurat/issues


Browse source code at https://github.com/cran/Seurat


Authors: Andrew Butler [ctb] , Saket Choudhary [ctb] , Charlotte Darby [ctb] , Jeff Farrell [ctb] , Christoph Hafemeister [ctb] , Yuhan Hao [ctb] , Paul Hoffman [aut, cre] , Jaison Jain [ctb] , Efthymia Papalexi [ctb] , Patrick Roelli [ctb] , Rahul Satija [ctb] , Karthik Shekhar [ctb] , Avi Srivastava [ctb] , Tim Stuart [ctb] , Kristof Torkenczy [ctb] , Shiwei Zheng [ctb] , Satija Lab and Collaborators [fnd]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports cluster, cowplot, fitdistrplus, future, future.apply, ggplot2, ggrepel, ggridges, graphics, grDevices, grid, httr, ica, igraph, irlba, jsonlite, KernSmooth, leiden, lmtest, MASS, Matrix, matrixStats, miniUI, patchwork, pbapply, plotly, png, RANN, RColorBrewer, Rcpp, RcppAnnoy, reticulate, rlang, ROCR, Rtsne, scales, scattermore, sctransform, SeuratObject, shiny, spatstat.core, spatstat.geom, stats, tibble, tools, utils, uwot

Depends on methods

Suggests ape, rsvd, testthat, hdf5r, S4Vectors, SummarizedExperiment, SingleCellExperiment, MAST, DESeq2, BiocGenerics, GenomicRanges, GenomeInfoDb, IRanges, rtracklayer, Rfast2, monocle, Biobase, VGAM, limma, metap, enrichR, mixtools, ggrastr

Linking to Rcpp, RcppEigen, RcppProgress


Imported by CAMML, CIDER, DR.SC, DUBStepR, PALMO, Platypus, SCRIP, Signac, SignacX, SoupX, maple, rPanglaoDB, scDiffCom, scMappR, scRNAstat, spruce, tidyseurat.

Suggested by BisqueRNA, CIARA, Canek, ClustAssess, DIscBIO, Rmagic, VAM, clustree, conos, dyngen, harmony, rliger, treefit.


See at CRAN