5.1.0 by Rahul Satija, 8 months ago
https://satijalab.org/seurat, https://github.com/satijalab/seurat
Report a bug at https://github.com/satijalab/seurat/issues
Browse source code at https://github.com/cran/Seurat
Authors: Andrew Butler [ctb] , Saket Choudhary [ctb] , David Collins [ctb] , Charlotte Darby [ctb] , Jeff Farrell [ctb] , Isabella Grabski [ctb] , Christoph Hafemeister [ctb] , Yuhan Hao [ctb] , Austin Hartman [ctb] , Paul Hoffman [ctb] , Jaison Jain [ctb] , Longda Jiang [ctb] , Madeline Kowalski [ctb] , Skylar Li [ctb] , Gesmira Molla [ctb] , Efthymia Papalexi [ctb] , Patrick Roelli [ctb] , Rahul Satija [aut, cre] , Karthik Shekhar [ctb] , Avi Srivastava [ctb] , Tim Stuart [ctb] , Kristof Torkenczy [ctb] , Shiwei Zheng [ctb] , Satija Lab and Collaborators [fnd]
Documentation:
PDF Manual
MIT + file LICENSE license
Imports cluster, cowplot, fastDummies, fitdistrplus, future, future.apply, generics, ggplot2, ggrepel, ggridges, graphics, grDevices, grid, httr, ica, igraph, irlba, jsonlite, KernSmooth, leiden, lifecycle, lmtest, MASS, Matrix, matrixStats, miniUI, patchwork, pbapply, plotly, png, progressr, purrr, RANN, RColorBrewer, Rcpp, RcppAnnoy, RcppHNSW, reticulate, rlang, ROCR, RSpectra, Rtsne, scales, scattermore, sctransform, shiny, spatstat.explore, spatstat.geom, stats, tibble, tools, utils, uwot
Depends on methods, SeuratObject
Suggests ape, arrow, BPCells, rsvd, testthat, hdf5r, S4Vectors, SummarizedExperiment, SingleCellExperiment, MAST, DESeq2, BiocGenerics, GenomicRanges, GenomeInfoDb, IRanges, rtracklayer, Rfast2, monocle, Biobase, VGAM, limma, metap, enrichR, mixtools, ggrastr, data.table, R.utils, presto, DelayedArray, harmony
Linking to Rcpp, RcppEigen, RcppProgress
Imported by APackOfTheClones, AnanseSeurat, CAESAR.Suite, CAMML, DR.SC, DWLS, GeneNMF, PRECAST, Platypus, PoweREST, ProFAST, SCIntRuler, SCRIP, SPECK, STREAK, SignacX, SoupX, SpaCCI, bbknnR, ggsector, mixhvg, nebula, rPanglaoDB, scAnnotate, scDiffCom, scGOclust, scGate, scMappR, scRNAstat, scaper, sccca, scperturbR, scpoisson, tidyseurat.
Depended on by CACIMAR, SCdeconR, scCustomize.
Suggested by BisqueRNA, CIARA, CRMetrics, Canek, ClustAssess, CytoSimplex, DIscBIO, RESET, SCORPIUS, SCpubr, Signac, SuperCell, VAM, cellpypes, clustree, combiroc, conos, countland, dyngen, easybio, grandR, harmony, laminr, mxfda, rliger, scregclust, treefit.
Enhanced by SeuratObject.