5.8-1 by Emmanuel Paradis, 7 months ago
https://github.com/emmanuelparadis/ape
Report a bug at https://github.com/emmanuelparadis/ape/issues
Browse source code at https://github.com/cran/ape
Authors: Emmanuel Paradis [aut, cre, cph] , Simon Blomberg [aut, cph] , Ben Bolker [aut, cph] , Joseph Brown [aut, cph] , Santiago Claramunt [aut, cph] , Julien Claude [aut, cph] , Hoa Sien Cuong [aut, cph] , Richard Desper [aut, cph] , Gilles Didier [aut, cph] , Benoit Durand [aut, cph] , Julien Dutheil [aut, cph] , RJ Ewing [aut, cph] , Olivier Gascuel [aut, cph] , Thomas Guillerme [aut, cph] , Christoph Heibl [aut, cph] , Anthony Ives [aut, cph] , Bradley Jones [aut, cph] , Franz Krah [aut, cph] , Daniel Lawson [aut, cph] , Vincent Lefort [aut, cph] , Pierre Legendre [aut, cph] , Jim Lemon [aut, cph] , Guillaume Louvel [aut, cph] , Federico Marotta [aut, cph] , Eric Marcon [aut, cph] , Rosemary McCloskey [aut, cph] , Johan Nylander [aut, cph] , Rainer Opgen-Rhein [aut, cph] , Andrei-Alin Popescu [aut, cph] , Manuela Royer-Carenzi [aut, cph] , Klaus Schliep [aut, cph] , Korbinian Strimmer [aut, cph] , Damien de Vienne [aut, cph]
Documentation:
PDF Manual
GPL-2 | GPL-3 license
Imports nlme, lattice, graphics, methods, stats, utils, parallel, Rcpp, digest
Suggests gee, expm, igraph, phangorn, xml2
Linking to Rcpp
Imported by AnnotationBustR, AntibodyForests, Apoderoides, BAT, BIEN, BoSSA, CALANGO, CRABS, CommEcol, DAISIEprep, DAMOCLES, DCLEAR, DDD, DHARMa, EnvNJ, EpiModel, EvoPhylo, FishPhyloMaker, FossilSim, FuncDiv, GIFT, GOCompare, GUniFrac, HACSim, HMPTrees, Hmsc, HybridMicrobiomes, LorMe, MACER, MAGNAMWAR, ML.MSBD, MLVSBM, MethEvolSIM, MiscMetabar, NST, NicheBarcoding, PBD, PCMBase, POMS, POSTm, POUMM, PVR, PhySortR, Plasmidprofiler, Quartet, RAINBOWR, RRPP, RRgeo, RRphylo, RevGadgets, Revticulate, Rogue, Rtapas, Rtropical, SPARTAAS, STEPCAM, STraTUS, SeqFeatR, SiPhyNetwork, Sysrecon, TBRDist, TML, TSLA, TransPhylo, TreeDiagram, TreeDist, TreeSearch, TreeSimGM, VIProDesign, Xplortext, aPCoA, abdiv, adaptiveGPCA, adegenet, adephylo, adiv, admtools, alakazam, aqp, arakno, autoGO, avotrex, beastier, beautier, betapart, bioregion, bioseq, bivariatemaps, bnpsd, canaper, chemodiv, cloneRate, colordistance, concatipede, copyseparator, covid19.analytics, dartR, dartR.base, ddtlcm, debar, divent, do3PCA, dowser, e2tree, ecoregime, entropart, epm, evobiR, evolqg, evolvability, evolved, file2meco, fishtree, funspace, genBaRcode, geneHapR, geomorph, ggmuller, ggrasp, glinvci, gquad, gromovlab, haplotypes, harrietr, hillR, holobiont, homals, iCAMP, iCellR, iNEXT.3D, iNEXT.beta3D, idar, immunarch, indelmiss, inecolr, insect, ipADMIXTURE, itol.toolkit, jackalope, longreadvqs, mFD, markophylo, metacoder, microeco, mmodely, msaR, multilaterals, mvSLOUCH, nLTT, nodiv, numbat, ontophylo, oppr, orthGS, outbreaker2, paco, palaeoverse, pcmabc, phyext2, phylepic, phylobase, phylocanvas, phylogram, phylopairs, phylopath, phyloraster, phyloregion, phylosem, phylosignal, phylosignalDB, phylospatial, phylter, phyr, pooledpeaks, poolfstat, popkin, poppr, poweRbal, ppgm, primerTree, prioritizr, qlcData, rKOMICS, rapidphylo, ratematrix, rbiom, restez, rhierbaps, rotl, rr2, rrnni, scistreer, secsse, sharpshootR, shazam, shinyTempSignal, shinyWGD, sidier, slendr, slouch, spANOVA, spider, stylo, tabs, tapnet, taxize, tbea, tidytree, treeDA, treebalance, treenomial, treesliceR, treestats, treestructure, vcfR, yatah.
Depended on by Anaconda, BAMMtools, BarcodingR, Canopy, Claddis, FD, JNplots, MCMCglmm, MCMCtreeR, MPSEM, MSCquartets, MSCsimtester, MiSPU, MonoPhy, OUwie, PhylogeneticEM, RNeXML, RPANDA, Rphylopars, TESS, TreeSim, TreeTools, VDJgermlines, apex, caper, cati, cauphy, clootl, coalescentMCMC, convevol, corHMM, dispRity, distory, diversitree, geiger, hisse, ips, jrich, motmot, mvMORPH, nichevol, nodeSub, paleoDiv, paleotree, pegas, perspectev, pez, phangorn, phyclust, phyloTop, phylolm, phytools, picante, quiddich, recluster, rwty, sensiPhy, strap, surface, treats, treebase, treespace, treestartr, windex.
Suggested by BSTZINB, CTNote, CongreveLamsdell2016, DAISIE, ENMTools, FAVA, FinePop, GLSME, HSAUR, HSAUR2, HSAUR3, MVA, OptCirClust, Platypus, RPointCloud, RRmorph, RVAideMemoire, Seurat, SoilTaxonomy, StratPal, TextMiningGUI, TiPS, TotalCopheneticIndex, ade4, adespatial, aphid, asnipe, babette, brms, castor, circlizePlus, data.tree, deeptime, delimtools, dendextend, divraster, dynamicSDM, ecolottery, ecospat, ecotraj, enveomics.R, fido, ggimage, gllvm, glmmTMB, hagis, harmonicmeanp, hierfstat, igraph, insight, jSDM, kmer, lingtypology, mcbette, mdendro, meconetcomp, mecoturn, metadat, metafor, metagear, netdiffuseR, nosoi, occCite, ouch, outbreaks, paleobuddy, pctax, phylocomr, phylotate, plotbb, polysat, rdiversity, rehh, rncl, rphylopic, sand, scrm, shipunov, spiralize, supportR, symmoments, taxlist, tidygraph, tidysq, tracerer, vhica, warbleR.
Enhanced by clue.