Fast Embedding Guided by Self-Organizing Map

Provides a smooth mapping of multidimensional points into low-dimensional space defined by a self-organizing map. Designed to work with 'FlowSOM' and flow-cytometry use-cases. See Kratochvil et al. (2019) .


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Reference manual

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install.packages("EmbedSOM")

1.9.1 by Mirek Kratochvil, 4 months ago


https://bioinfo.uochb.cas.cz/embedsom


Browse source code at https://github.com/cran/EmbedSOM


Authors: Mirek Kratochvil [aut, cre] , Sofie Van Gassen [cph] , Britt Callebaut [cph] , Yvan Saeys [cph] , Ron Wehrens [cph]


Documentation:   PDF Manual  


GPL (>= 3) license


Suggests ggplot2, Matrix, igraph, Rtsne, umap, uwot, knitr, rmarkdown


See at CRAN