Fast Embedding Guided by Self-Organizing Map

Provides a smooth mapping of multidimensional points into low-dimensional space defined by a self-organizing map. Designed to work with 'FlowSOM' and flow-cytometry use-cases. See Kratochvil et al. (2019) .


Reference manual

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2.1.1 by Mirek Kratochvil, a year ago

Browse source code at

Authors: Mirek Kratochvil [aut, cre] , Sofie Van Gassen [cph] , Britt Callebaut [cph] , Yvan Saeys [cph] , Ron Wehrens [cph]

Documentation:   PDF Manual  

GPL (>= 3) license

Imports FNN, ggplot2, igraph, Matrix, Rtsne, umap, uwot

Suggests knitr, rmarkdown

See at CRAN