Graph-Based Permutation Tests for Microbiome Data

Provides functions for graph-based multiple-sample testing and visualization of microbiome data, in particular data stored in 'phyloseq' objects. The tests are based on those described in Friedman and Rafsky (1979) <>, and the tests are described in more detail in Callahan et al. (2016) .


Reference manual

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0.1.0 by Julia Fukuyama, a year ago

Browse source code at

Authors: Julia Fukuyama [aut, cre]

Documentation:   PDF Manual  

CC0 license

Imports ggnetwork, igraph, intergraph

Depends on ggplot2, phyloseq

Suggests knitr, rmarkdown

See at CRAN