Graph-Based Permutation Tests for Microbiome Data

Provides functions for graph-based multiple-sample testing and visualization of microbiome data, in particular data stored in 'phyloseq' objects. The tests are based on those described in Friedman and Rafsky (1979) < http://www.jstor.org/stable/2958919>, and the tests are described in more detail in Callahan et al. (2016) .


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install.packages("phyloseqGraphTest")

0.0.2 by Julia Fukuyama, 7 months ago


https://github.com/jfukuyama/phyloseqGraphTest


Browse source code at https://github.com/cran/phyloseqGraphTest


Authors: Julia Fukuyama [aut, cre]


Documentation:   PDF Manual  


CC0 license


Imports ggnetwork, igraph, intergraph

Depends on ggplot2, phyloseq

Suggests knitr, rmarkdown


See at CRAN