Methods and Measures for Brain, Cognitive, and Psychometric Network Analysis

Implements network analysis and graph theory measures used in neuroscience, cognitive science, and psychology. Methods include various filtering methods and approaches such as threshold, dependency (Kenett, Tumminello, Madi, Gur-Gershgoren, Mantegna, & Ben-Jacob, 2010 ), Information Filtering Networks (Barfuss, Massara, Di Matteo, & Aste, 2016 ), and Efficiency-Cost Optimization (Fallani, Latora, & Chavez, 2017 ). Several network measures are translated from the Brain Connectivity Toolbox (Rubinov & Sporns, 2010 ). Brain methods include the recently developed Connectome Predictive Modeling (see references in package). Also implements several network measures including local network characteristics (e.g., centrality), community-level network characteristics (e.g., community centrality), global network characteristics (e.g., clustering coefficient), and various other measures associated with the reliability and reproducibility of network analysis.


Reference manual

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install.packages("NetworkToolbox")

1.5.0 by Alexander Christensen, 5 hours ago


Browse source code at https://github.com/cran/NetworkToolbox


Authors: Alexander Christensen [aut, cre] (ORCID: , Guido Previde Massara [ctb] (Author of MFCF , ORCID: , BCT Contributors [cph] (Copyright holder of the Brain Connectivity Toolbox (BSD 3-clause license)) , Mika Rubinov [cph, ctb] (Original MATLAB implementations in the Brain Connectivity Toolbox (betweenness , distance , clustering , transitivity , participation , diversity , and Louvain)) , Olaf Sporns [cph, ctb] (Original MATLAB implementations in the Brain Connectivity Toolbox (random and lattice networks)) , Alex Fornito [cph, ctb] (Original MATLAB participation coefficient in the Brain Connectivity Toolbox) , Jeff Spielberg [cph, ctb] (Original MATLAB gateway coefficient in the Brain Connectivity Toolbox) , Jonathan Clayden [cph, ctb] (Original MATLAB binary distance in the Brain Connectivity Toolbox) , Rick Betzel [cph, ctb] (Original MATLAB weighted distance in the Brain Connectivity Toolbox) , Andrea Avena [cph, ctb] (Original MATLAB weighted distance in the Brain Connectivity Toolbox) , Alexandros Goulas [cph, ctb] (Original MATLAB binary transitivity in the Brain Connectivity Toolbox)


Documentation:   PDF Manual  


GPL (>= 3.0) license


Imports corrplot, doParallel, fdrtool, foreach, igraph, IsingFit, MASS, methods, parallel, pbapply, ppcor, psych, pwr, R.matlab, qgraph

Suggests googledrive


Imported by bootnet.

Suggested by FCPS, GGMncv.


See at CRAN