Identification of Cell Types and Inference of Lineage Trees from Single-Cell RNA-Seq Data

Application of 'RaceID' allows inference of cell types and prediction of lineage trees by he StemID2 algorithm. Herman, J.S., Sagar, Grün D. (2018) .


Reference manual

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0.1.6 by Dominic Grün, 24 days ago

Browse source code at

Authors: Dominic Grün <[email protected]>

Documentation:   PDF Manual  

GPL-3 license

Imports coop, compiler, cluster, FateID, FNN, fpc, ggplot2, grDevices, ica, igraph, irlba, locfit, methods, MASS, Matrix, parallel, pheatmap, propr, quadprog, randomForest, Rcpp, RColorBrewer, Rtsne, umap, vegan

Suggests DESeq2, destiny, knitr, rmarkdown, scran

Linking to Rcpp

See at CRAN