Identification of Cell Types and Inference of Lineage Trees from Single-Cell RNA-Seq Data

Application of 'RaceID' allows inference of cell types and prediction of lineage trees by he StemID2 algorithm. Herman, J.S., Sagar, Grün D. (2018) .


Reference manual

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0.1.3 by Dominic Grün, 25 days ago

Browse source code at

Authors: Dominic Grün <[email protected]>

Documentation:   PDF Manual  

GPL-3 license

Imports coop, cluster, FateID, fpc, grDevices, ica, igraph, irlba, locfit, methods, MASS, Matrix, pheatmap, quadprog, randomForest, RColorBrewer, Rtsne, vegan

Suggests DESeq2, destiny, knitr, rmarkdown, scran

See at CRAN