Identification of Cell Types and Inference of Lineage Trees from Single-Cell RNA-Seq Data

Application of 'RaceID' allows inference of cell types and prediction of lineage trees by he StemID2 algorithm. Herman, J.S., Sagar, Grün D. (2018) .


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install.packages("RaceID")

0.1.5 by Dominic Grün, a month ago


Browse source code at https://github.com/cran/RaceID


Authors: Dominic Grün <[email protected]>


Documentation:   PDF Manual  


GPL-3 license


Imports coop, compiler, cluster, FateID, FNN, fpc, ggplot2, grDevices, ica, igraph, irlba, locfit, methods, MASS, Matrix, parallel, pheatmap, propr, quadprog, randomForest, Rcpp, RColorBrewer, Rtsne, umap, vegan

Suggests DESeq2, destiny, knitr, rmarkdown, scran

Linking to Rcpp


See at CRAN