Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data

Application of 'RaceID' allows inference of cell types and prediction of lineage trees by the 'StemID2' algorithm (Herman, J.S., Sagar, Grun D. (2018) ). 'VarID2' is part of this package and allows quantification of biological gene expression noise at single-cell resolution (Rosales-Alvarez, R.E., Rettkowski, J., Herman, J.S., Dumbovic, G., Cabezas-Wallscheid, N., Grun, D. (2023) ).


Reference manual

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install.packages("RaceID")

0.4.2 by Dominic Grün, 4 months ago


Browse source code at https://github.com/cran/RaceID


Authors: Dominic Grün [aut, cre]


Documentation:   PDF Manual  


GPL-3 license


Imports coop, compiler, cluster, FateID, FNN, fpc, ggplot2, grDevices, harmony, ica, igraph, irlba, leiden, locfit, methods, MASS, Matrix, matrixStats, parallel, pheatmap, princurve, quadprog, randomForest, runner, Rcpp, RColorBrewer, Rtsne, umap, vegan

Suggests batchelor, DESeq2, knitr, rmarkdown, SingleCellExperiment, slingshot, SummarizedExperiment

Linking to Rcpp

System requirements: C++17


Imported by sclValid.


See at CRAN