R and C/C++ Wrappers to Run the Leiden find_partition() Function

An R to C/C++ interface that runs the Leiden community detection algorithm to find a basic partition (). It runs the equivalent of the 'leidenalg' find_partition() function, which is given in the 'leidenalg' distribution file 'leiden/src/functions.py'. This package includes the required source code files from the official 'leidenalg' distribution and functions from the R 'igraph' package. The 'leidenalg' distribution is available from < https://github.com/vtraag/leidenalg/> and the R 'igraph' package is available from < https://igraph.org/r/>. The Leiden algorithm is described in the article by Traag et al. (2019) . Leidenbase includes code from the packages: igraph version 0.9.8 with license GPL (>= 2), leidenalg version 0.8.10 with license GPL 3.


Reference manual

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install.packages("leidenbase")

0.1.37 by Brent Ewing, 5 months ago


https://github.com/cole-trapnell-lab/leidenbase


Report a bug at https://github.com/cole-trapnell-lab/leidenbase/issues


Browse source code at https://github.com/cran/leidenbase


Authors: Brent Ewing [aut, cre] , Vincent Traag [ctb] , Gábor Csárdi [ctb] , Tamás Nepusz [ctb] , Szabolcs Horvat [ctb] , Fabio Zanini [ctb]


Documentation:   PDF Manual  


GPL-3 license


Imports igraph

Suggests rmarkdown, knitr, testthat, pandoc


Suggested by ClustAssess, Seurat.


See at CRAN