Phylogenetic ANalyses of DiversificAtion

Implements macroevolutionary analyses on phylogenetic trees. See Morlon et al. (2010) , Morlon et al. (2011) , Condamine et al. (2013) , Morlon et al. (2014) , Manceau et al. (2015) , Lewitus & Morlon (2016) , Drury et al. (2016) , Manceau et al. (2016) , Morlon et al. (2016) , Clavel & Morlon (2017) , Drury et al. (2017) , Lewitus & Morlon (2017) , Drury et al. (2018) , Clavel et al. (2019) , Maliet et al. (2019) , Billaud et al. (2019) , Lewitus et al. (2019) , Aristide & Morlon (2019) , Maliet et al. (2020) and Drury et al. (2021) .

R: Phylogenetic ANalyses of DiversificAtion

Implements fits of diversification and phenotypic evolution models to phylogenetic data. See Morlon et al. PLoSB (2010), Morlon et al. PNAS (2011), Condamine et al. Eco Lett (2013), Morlon et al. Eco Lett (2014), Manceau et al. Eco Lett (2015), Lewitus & Morlon Syst Biol (2016), Drury et al. Syst Biol (2016), Manceau et al. Syst Biol (2016), Clavel & Morlon PNAS (2017), Drury et al. Syst Biol (2017), Lewitus & Morlon Syst Biol (2017), Drury et al. PLoSB (2018) and Clavel et al. Syst Biol (2019).

More information on the RPANDA package and worked examples can be found in Morlon et al. (2016)

The current stable version of the RPANDA package (1.5) is available on the CRAN repository.

Package Installation

From gitHub You can install RPANDA directly from gitHub with devtools:


install_github("hmorlon/PANDA", dependencies = TRUE)

From the binaries

You can download the pre-released binaries for Windows and Mac OS X from the release page

From the source

Otherwise, you can install it directly from the source. Download the RPANDA folder and then, from the terminal console (linux, windows or mac):


This will produce the RPANDA tarball.

Then, for compiling the binary:

R CMD INSTALL --build RPANDA_1.X.tar.gz

Report an issue

Any bugs encountered when using the package can be reported here

Continuous integration

Travis-CI Build Status: Build Status


Reference manual

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2.0 by Hélène Morlon, 17 days ago

Browse source code at

Authors: Hélène Morlon [aut, cre, cph] , Eric Lewitus [aut, cph] , Fabien Condamine [aut, cph] , Marc Manceau [aut, cph] , Julien Clavel [aut, cph] , Jonathan Drury [aut, cph] , Olivier Billaud [aut, cph] , Odile Maliet [aut, cph] , Leandro Aristide [aut, cph]

Documentation:   PDF Manual  

GPL-2 license

Imports bipartite, cluster, coda, deSolve, fields, fpc, glassoFast, graphics, grDevices, igraph, Matrix, mvMORPH, parallel, phytools, pspline, pvclust, raster, Rmpfr, stats, TESS, utils

Depends on ape, picante, methods

Suggests testthat

Imported by nodeSub.

See at CRAN