Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification. Beaulieu and O'Meara (2016) .
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2.1.11 by Jeremy Beaulieu, 4 years ago
Browse source code at https://github.com/cran/hisse
Authors: Jeremy Beaulieu [aut, cre] , Brian O'Meara [aut] , Daniel Caetano [aut] , James Boyko [aut] , Thais Vasconcelos [aut]
Documentation: PDF Manual
GPL (>= 2) license
Imports parallel, phytools, data.table, igraph, methods, diversitree, paleotree, plotrix, geiger, phangorn, TreeSim, corHMM
Depends on ape, deSolve, GenSA, subplex, nloptr
Suggests testthat, knitr, rmarkdown, markdown
Suggested by fishtree.
See at CRAN