Hidden State Speciation and Extinction

Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification. Beaulieu and O'Meara (2016) .

hisse is currently in review; see the manuscript here.


Windows users install Rtools first.



Reference manual

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1.9.19 by Jeremy Beaulieu, 4 months ago

Browse source code at https://github.com/cran/hisse

Authors: Jeremy Beaulieu [aut, cre] , Brian O'Meara [aut] , Daniel Caetano [aut] , James Boyko [aut]

Documentation:   PDF Manual  

Task views:

GPL (>= 2) license

Imports parallel, phytools, data.table, methods, diversitree, plotrix

Depends on ape, deSolve, GenSA, subplex, nloptr

Suggests testthat, knitr, rmarkdown

Suggested by fishtree.

See at CRAN