Hidden State Speciation and Extinction

Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification. Beaulieu and O'Meara (2016) .

hisse is currently in review; see the manuscript here.


Windows users install Rtools first.



Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.


2.1.6 by Jeremy Beaulieu, 2 months ago

Browse source code at https://github.com/cran/hisse

Authors: Jeremy Beaulieu [aut, cre] , Brian O'Meara [aut] , Daniel Caetano [aut] , James Boyko [aut] , Thais Vasconcelos [aut]

Documentation:   PDF Manual  

Task views:

GPL (>= 2) license

Imports parallel, phytools, data.table, igraph, methods, diversitree, paleotree, plotrix, geiger, phangorn, TreeSim, corHMM

Depends on ape, deSolve, GenSA, subplex, nloptr

Suggests testthat, knitr, rmarkdown, markdown

Suggested by fishtree.

See at CRAN