Dimensionality Reduction Methods in a Common Format

Provides a common interface for applying dimensionality reduction methods, such as Principal Component Analysis ('PCA'), Independent Component Analysis ('ICA'), diffusion maps, Locally-Linear Embedding ('LLE'), t-distributed Stochastic Neighbor Embedding ('t-SNE'), and Uniform Manifold Approximation and Projection ('UMAP'). Has built-in support for sparse matrices.


Reference manual

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1.0.4 by Robrecht Cannoodt, 8 months ago


Report a bug at https://github.com/dynverse/dyndimred/issues

Browse source code at https://github.com/cran/dyndimred

Authors: Robrecht Cannoodt [aut, cre] , rcannood) , Wouter Saelens [aut] , zouter)

Documentation:   PDF Manual  

MIT + file LICENSE license

Imports dynutils, irlba, lmds, stats, tibble

Suggests testthat, diffusionMap, fastICA, igraph, lle, MASS, Matrix, RANN, Rtsne, smacof, uwot

Imported by dynplot.

Suggested by dynwrap.

See at CRAN