Dimensionality Reduction Methods in a Common Format

Provides a common interface for applying dimensionality reduction methods, such as Principal Component Analysis ('PCA'), Independent Component Analysis ('ICA'), diffusion maps, Locally-Linear Embedding ('LLE'), t-distributed Stochastic Neighbor Embedding ('t-SNE'), and Uniform Manifold Approximation and Projection ('UMAP'). Has built-in support for sparse matrices.


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install.packages("dyndimred")

1.0.3 by Wouter Saelens, 7 months ago


https://github.com/dynverse/dyndimred


Report a bug at https://github.com/dynverse/dyndimred/issues


Browse source code at https://github.com/cran/dyndimred


Authors: Robrecht Cannoodt [aut] , rcannood) , Wouter Saelens [aut, cre] , zouter)


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports dynutils, irlba, lmds

Suggests testthat, destiny, diffusionMap, fastICA, igraph, lle, MASS, Matrix, RANN, Rtsne, smacof, uwot


Suggested by dynwrap.


See at CRAN