News

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• CHANGES IN VERSION 2.19

  • The Title in Description is changed.
  • Function "I.g" is added.

• CHANGES IN VERSION 2.20

  • Reversible jump MCMC algorithm is added to the "bdgraph()" fonction.

• CHANGES IN VERSION 2.23

  • Function "I.g()" is chenged to "log_Ig()" and it is implemented in C++.

• CHANGES IN VERSION 2.24

  • Function "phat()" is changed to "plinks()".
  • Function "prob()" is changed to "pgraph()".
  • Function "log_Ig()" is changed to "gnorm()".

• CHANGES IN VERSION 2.28

  • The Title in Description is changed.
  • Functions "bdgraph.ts()", "rgcwish()", and "rcwish()" are added to the package.

• CHANGES IN VERSION 2.36

  • The BDMCMC algorithms are implimented in parallel using OpenMP in C++.

• CHANGES IN VERSION 2.38

  • Function "bdgraph.mpl()" is added to the package, which is based on Marginal Pseudo-Likelihood estimation.
  • In algorithm "gcgm", step "copula" are implimented in parallel using OpenMP in C++.
  • Function "bdgraph.ts" is implimented in parallel using OpenMP in C++.
  • New reference related to the ratio of normalizing constant is added to manual.

• CHANGES IN VERSION 2.40

  • Option "g.prior" is added to function "bdgraph()", for prior distribution of the graph.
  • Option "cores" is added to function "bdgraph()", for determining the number of cores to use for parallel execution.
  • Function "transfer()" is added to the package.

• CHANGES IN VERSION 2.41

  • Option "dgm-binary" is added to function "bdgraph()" which is for running Hill-Climbing algorihtm for binary data.
  • "configure" and "configure.ac" are added to configure checks of C++ codes.

• CHANGES IN VERSION 2.42

  • Function "local_rates_ggm_mpl" in cpp is added for bdgraph.mpl function.
  • configure and configure.ac is added to the package for Makevars file.
  • Functions "bdgraph.ts", "rcwish", and "rcgwish" are removed from the package.

• CHANGES IN VERSION 2.44

  • Functions "bdgraph.ts", "rcwish", and "rcgwish" are added to the package.

• CHANGES IN VERSION 2.46

  • Function "rmvnorm" is added to the package.

• CHANGES IN VERSION 2.47

  • Function "graph.sim" is added to the package.
  • Function "plot.graph" is added to the package.

• CHANGES IN VERSION 2.51

  • Bug fixed for "rgwish()" and "rcgwish()" functions.
  • vignette is added to the package.

• CHANGES IN VERSION 2.52

  • Option "threshold" is added to function "rgwish()".
  • Option "threshold" is added to function "bdgraph()".
  • Option "not.cont" is added to function "bdgraph()".
  • In function "compare()", option "colnames" is changed to "main".
  • Option "g.space" is removed from functions "bdgraph()" and "bdgraph.mpl()". Instead user can use option "g.prior".
  • Bug fixed for "bdgraph.ts()" function.
  • Data set "churn" is added.

• CHANGES IN VERSION 2.53

  • Files "configure" and "configure.ac" are removed and files "Makevars" and "Makevars.win" are modified accordingly.

  • In function "bdgraph()", "bdgraph.mpl()", and "bdgraph.ts()" option "save.all" is changed to "save".

  • In function "bdgraph()" and "bdgraph.mpl()", option "multi.update" is changed to "jump".

  • In function "bdgraph()" and "bdgraph.ts()", option "prior.df" is changed to "df.prior".

  • In function "pgraph()", option "adj_g" is changed to "adj".

• CHANGES IN VERSION 2.56

  • In function "rgwish()", "rgcwish()" and "gnorm()", option "adj.g" is changed to "adj".

  • In function "compare()", option "sim.obj" is changed to "target".

  • In function "compare()", option "bdgraph.obj" is changed to "est".

  • In function "compare()", option "bdgraph.obj2" is changed to "est2".

  • In function "compare()", option "bdgraph.obj3" is changed to "est3".

  • In function "plotroc()", option "sim.obj" is changed to "target".

  • In function "plotroc()", option "bdgraph.obj" is changed to "est".

  • In function "plotroc()", option "bdgraph.obj2" is changed to "est2".

  • In function "plotroc()", option "bdgraph.obj3" is changed to "est3".

  • In function "plotroc()", option "bdgraph.obj4" is changed to "est4".

  • Bug fixed for "bdgraph()" function with option "method = gcgm".

  • Function "summary.bdgraph", "plot.bdgraph", and "print.bdgraph" are modified.

• CHANGES IN VERSION 2.57

  • In function "compare()" option "est4" is added.

• CHANGES IN VERSION 2.58

  • Bug fixed for "compare()" function.
  • Function "get_graph()" is added to the package and used inside function "compare()".
  • Function "get_g_prior()", "get_g_start()", "get_S_n_p()", and "get_K_start()" are added to the package and used inside function "bdgraph()".

Reference manual