Clean and Visualize Over Expression Results from 'ConsensusPathDB'

Provides functions to have visualization and clean-up of enriched gene ontologies (GO) terms, protein complexes and pathways (obtained from multiple databases) using 'ConsensusPathDB' from gene set over-expression analysis. Performs clustering of pathway based on similarity of over-expressed gene sets and visualizations similar to Ingenuity Pathway Analysis (IPA) when up and down regulated genes are known. The methods are described in a paper currently submitted by Orecchioni et al, 2020 in Nanoscale.


Reference manual

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1.0-1 by Raghvendra Mall, a month ago

Browse source code at

Authors: Raghvendra Mall [aut, cre]

Documentation:   PDF Manual  

GPL (>= 3) license

Depends on ggplot2, igraph, devtools, ggrepel, grDevices

See at CRAN